Array 1 334442-336299 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNT01000002.1 Salmonella enterica strain BCW_4926 NODE_2_length_462667_cov_3.72281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334442 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 334503 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 334564 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 334625 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 334686 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 334747 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 334808 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 334869 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 334930 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 334991 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 335052 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335113 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335174 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 335235 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 335296 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 335357 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 335418 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 335479 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335540 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335601 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335662 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 335723 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 335784 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 335845 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 335906 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 335967 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 336028 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 336089 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 336150 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 336211 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 336272 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352981-354720 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNT01000002.1 Salmonella enterica strain BCW_4926 NODE_2_length_462667_cov_3.72281, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 352981 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 353042 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 353103 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 353164 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 353225 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 353286 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 353347 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 353408 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 353469 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 353530 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 353591 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 353652 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 353713 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 353774 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 353835 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 353896 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 353957 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 354018 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 354080 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 354142 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 354203 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 354264 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 354325 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 354386 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 354447 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 354508 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 354569 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 354630 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 354691 29 100.0 0 ............................. | A [354718] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //