Array 1 62176-59799 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUM01000003.1 Eggerthella lenta strain 32-6-I 6 NA NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 62175 33 100.0 33 ................................. TGGCACACGGACGACGTGGGCAACTATTCTCTA 62109 33 100.0 34 ................................. ATAAGGTGCACGCGTTCGACGCCAAAAGCCAGCA 62042 33 100.0 34 ................................. CAGCAGGGCTATTTCGAGAAGATCGACCGCCAGC 61975 33 100.0 34 ................................. GATAACGAGTTCGCGGGCGAGTTCGCGCCGGAGG 61908 33 100.0 33 ................................. AGCCTGGCATCGGGGCTGGTGACGGAATCGGCC 61842 33 100.0 34 ................................. CAGCGTGAAAGCGTTGCTATTGGGCATCGTCAAA 61775 33 100.0 34 ................................. TGGAAAGCGTCCTGGAGTTCCTTAATCGCCTCAG 61708 33 100.0 33 ................................. CGGGCTGTACGCGTAGGCGATCCACGAGAACTG 61642 33 100.0 33 ................................. GGTTCCAACGTGGCTTTCGAGATTATCTGCAAC 61576 33 100.0 33 ................................. TCGAACATGACGTGCGGGATGCCGATCAACCGG 61510 33 100.0 34 ................................. CAATTGAAGGAGGAATGAAGTGCGAGGAATAGAC 61443 33 100.0 33 ................................. CGGTCGAGACCGGCGCATTTGATGCTGTCGGTG 61377 33 100.0 33 ................................. TGGATATCATCACAGGTTTCACCGCTGCGGTGG 61311 33 100.0 35 ................................. GTGTTGATCGGCATGGAGGGAAGCTATCCCGTGGT 61243 33 100.0 34 ................................. AAACACTAGCAAGGAGAGTGTACCATGCCCAAGA 61176 33 100.0 34 ................................. CGGTTTGATCTCCGGCATCTCGAATCCCTCCATC 61109 33 100.0 33 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAGC 61043 33 100.0 33 ................................. CAGATGTCGCCGTTCATGGGCGCTTCAAGATCG 60977 33 100.0 33 ................................. CTCATAGTATGCGGGGCGCTGATGCGCGCCCCG 60911 33 100.0 33 ................................. CTCATTGGTGATCTCAATTCCAACCGGCACGAA 60845 33 100.0 34 ................................. TCCAGTATACAGAGCGTTGCGCAAGTTGTCCTGG 60778 33 100.0 33 ................................. CCGTGCTGCGCCCGCCCAATTCCATGAAAAGGC 60712 33 100.0 34 ................................. CAAAACCGAGAGGATGCTCATATCCGACGGCCGC 60645 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 60579 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 60509 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 60443 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 60377 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 60311 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 60241 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 60172 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 60101 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 60035 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 59968 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 59899 32 93.9 34 .................-..............C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 59833 33 75.8 0 .....GTT.A..T.....C.C..........G. | C,T [59817,59829] ========== ====== ====== ====== ================================= ====================================== ================== 36 33 98.7 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : CGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28-196 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUM01000069.1 Eggerthella lenta strain 32-6-I 6 NA NODE_69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 28 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 94 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 164 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 100.0 36 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCTGGACGGCTACAACCGCACCCACGAG # Right flank : AGCCTCTTTTCGCTCGTCGCGTTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //