Array 1 236429-232432 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDA01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIA .SLX_12186.D710_D506.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236428 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 236367 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 236306 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 236245 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 236184 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 236123 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 236062 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 236001 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 235940 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 235879 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 235818 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 235757 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 235695 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 235634 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 235573 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 235512 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 235451 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 235390 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 235329 29 96.6 32 ............................T CGCCCACCCTGAGTATTATCACTACTCCGGAC 235268 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 235206 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 235145 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 235084 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 235023 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 234962 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 234901 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 234840 29 100.0 32 ............................. TATTTCACTGACTGACTACGGCGGATCGAGTA 234779 29 100.0 32 ............................. TCAGGAAACAGCGCAATATTGATTTACTCGCA 234718 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCGGAGATGGTG 234657 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 234596 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 234535 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 234474 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 234413 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 234351 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 234290 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 234229 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 234168 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 234107 29 100.0 32 ............................. CTGTTTTGTCTCACGCTGGCGACCTCCCTGGT 234046 29 100.0 32 ............................. GCGGGACCGGAGGCGCAAGTGGTGGCGCTTTA 233985 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 233924 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 233863 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 233802 29 100.0 32 ............................. GCGTTTGAATCCTCCTGGTGGCGTATGCAGGG 233741 29 96.6 32 ..........T.................. GCCCGAGACACCCGCGCGTTATTTTTGAACCT 233680 29 100.0 32 ............................. TTTGAACAGGCGCTGAACTGGGCTGATATCGC 233619 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 233558 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 233497 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 233436 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 233375 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 233314 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 233253 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 233191 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 233130 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 233069 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 233008 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 232947 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 232886 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 232825 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 232764 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 232703 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 232642 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 232581 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 232520 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 232459 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 253683-252984 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGDA01000002.1 Salmonella enterica subsp. enterica serovar Muenster strain TRWAIIA .SLX_12186.D710_D506.HJ72NBBXX.s_1.r.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 253682 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 253621 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 253560 29 96.6 32 ............T................ CCGAAATACGATGCCGGAATATCGTAAACGGA 253499 29 100.0 32 ............................. GGAGGACGCTACTATCGGATTCGCTCCGGGGA 253438 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 253377 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 253316 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 253255 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 253194 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 253133 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 253072 29 93.1 32 .....A......T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 253011 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //