Array 1 36721-38640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHMS010000004.1 Aerococcus urinae isolate Au-16-B92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36721 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 36782 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 36844 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 36905 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 36966 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 37027 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 37088 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 37149 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 37210 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 37271 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 37332 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 37393 29 96.6 32 ............................C TATGAAGTAGTAAGATGAGTTCTTCGTCTACC 37454 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 37515 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 37576 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 37637 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 37698 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 37759 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 37821 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 37882 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 37943 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 38004 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 38065 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 38126 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 38187 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 38248 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 38308 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 38369 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 38430 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 38491 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 38551 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 38612 28 75.9 0 ......-....C.......T.T.A...TG | A [38630] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.5 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATCGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57591-58288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHMS010000004.1 Aerococcus urinae isolate Au-16-B92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57591 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 57652 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 57713 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 57774 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 57835 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 57896 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 57957 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 58018 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 58080 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 58141 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 58202 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 58262 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.9 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //