Array 1 75655-75508 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWGA01000006.1 Candidatus Schmidhempelia bombi str. Bimp ctg820001289385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75654 27 96.4 32 -........................... GAAAGGTGTTGATTTTATCAAAACCTTTAGGT 75595 28 100.0 32 ............................ GCACTTTCATGATCACTTACCAAAGCAATATT 75535 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 96.4 32 GTTAACCGCCGCGTAGGCGGCTTAGAAA # Left flank : | # Right flank : TTTGGATTTTGGAAGGATAAAATAAGTATTTGCTATTGAACATTAGCTTAATTTATTTTTAGTATATGTTGATAAAAAGCCACATAATAATCGTTATAGTCATATAATATCAATTTGCTGATTTACTATTGTAAGCAATAAAAATGATAATGTTCGACAAATTACTTACTATACCTAGACTTACGAACAATATTATTCTTTTTATTATATAAGATCATTATTGTAAGGAAATAACCATGACTGTTATGCCTATTTTTCTTTCAGAAAATCCCGCGCCTATTAAATGGGGAAATCATGCATTAATCAGCTATGCTGAACAAGGTGCAACTATTCATTATAAACACGAAACAAAATTGTCTTCTATTCAGCGTGCTGGAAGGCGGTTTGATAATCAAGGTATTAAGAGTGTCCAATTAGCTGGGGATGGCTGGGATCTTGAATCCGCTTGGCATTTTTGGCAAGGATTTCGTCACCCTAAGCGTAATAATGTGATTGAATGG # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2633-3021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWGA01000126.1 Candidatus Schmidhempelia bombi str. Bimp 47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 2633 29 100.0 31 ............................. ATCCAAATCTGGATTAAAGTGTAATTTATTC 2693 29 100.0 31 ............................. TACTGCTTGCAAACCATTTTGCTAAATTTCT 2753 29 96.6 31 ............................G CCTTCTTCGTTACGCTGATTATATTATCGAT 2813 29 100.0 31 ............................. AAATAATCAGCTAACGAACCTATAGCAAAGC 2873 29 96.6 31 ............................T TTCTGAGCCCATGGAAGACAAGAAGTAAAGT 2933 29 96.6 31 ............................T AAAAAAATTTTGGAAAAACAATATCTTATGA 2993 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 7 29 98.5 31 CTTAACCGCCGCATAGGCGGCTTAGAAAA # Left flank : AAACAGAAGTAGCTAAAGAAGTAAGAAAATGGTTACTAGATTTAGCTGATAAAGAAACACATCAACAGGTCCTTTTACCAGCAGTTGCAAATATACCGCATGAGGGGCGATGGGTGGTTAGATATATTGATGGCGTAGTAGAGGTTAAAAATATTGATGGTAAAGTTTGCATTGATAACATGTTATTTCTTCAACTACAAAAAGATTCAATTTATTATCGAAATAAATTGATTGAGTTGAATGATAAATTAAAACAATTTACTACACTAACAAATAATTTTGTGGAAAGAACAAAAATCACAAGTGGTGAGTGTAGCGTATCACTATTTGCTACACCGCTTAAATTGGCTTAGAACTTAAACTATATAACCCTTTTTTTTAGACAGATATTTAACTATTTGATTATTATAGATTAATTCATAGGTAATAAAAAAAGGGTTATTTTGGGTATAACGGTTATTTTTCTTTTTAAATTAAACGGTTATCTTGATATAATTCTA # Right flank : CCCCAGATTATCAATATTTAGCCGCTAGATTAGCTTAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACCGCCGCATAGGCGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 727-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWGA01000007.1 Candidatus Schmidhempelia bombi str. Bimp ctg820001289386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 726 28 100.0 32 ............................ ATTATATATAAATCCTGCGACACTCGCACCAC 666 28 100.0 32 ............................ AAAACTATTGATATTAATAGTCGGAATATTTA 606 28 100.0 32 ............................ TTTTATTCTTCAACATCATTATATTTTTCTTT 546 28 100.0 32 ............................ TTGACGACGAGACGCAACAACAGTGCGCGCGT 486 28 100.0 32 ............................ TTCATGCTCATCAAGAGTCTCAAAAGTACATA 426 28 100.0 32 ............................ TCATCTCAATGTATGCGATCTAGCAAGAAGAG 366 28 100.0 32 ............................ AATAGTTTTTACAAATTTCTATATCAAAAATA 306 28 100.0 32 ............................ ACTAATATAAATAAAAAAACCCGCAATTTTTT 246 28 100.0 32 ............................ AATAGTTTCAACTAGTGAGAGAAACATATCAA 186 28 100.0 32 ............................ AACAAGAGATTGAACACCGTCGCTATAAAATG 126 28 100.0 32 ............................ AGCTGATTAGACAAAGAGTTAGCATCTAAGCC 66 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 100.0 32 GTTAACCGCCGCGTAGGCGGCTTAGAAA # Left flank : TGACAATTAATAAGATTTATCAAGGTATTAAAATAGCTAGCCAAGATTAAAATAAGCATGGAATCGTTCTTGTTTAGTGGTTATAAAATTCGACGGTCTATTTTAATTATTTGGTTAAGATAGAGATGAGTAATAGTTATCTATCAATAATATATATATAAAGGTTAATTTAGCCGCTATTTTACAAATAAATAAACTAACTTAAGCATAGACTTATGCTCACAGTTTGTTCACACATTCTCTGTGTATGCCAAATATATTTTTAGATTAAGTTTAGATAGCTTAATCTTACTGATCATCATTACTATTAATACAAATTATATTTTCCTCTTTATAGTTATAAATCAAAATTTCTCACTACCCTAATTTACCCCTTTTATTTTGCTTATTTATAATGCATTGATTTTATTATAAAAAATACAGTCTTTTAAAAAAGGGTCTTTTATGCTAAATAGATTATTTTTTTATTTAAACCAAATAGTTAATCTGATAAAATTCTA # Right flank : AACGTTCCATCGAACATGCCGGCAAACGGGCTAGTTAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37652-36964 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWGA01000007.1 Candidatus Schmidhempelia bombi str. Bimp ctg820001289386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37651 28 100.0 32 ............................ ATTTGTGCCCAGATTCAAAGAGCCTAAAATTA 37591 28 100.0 32 ............................ ATATTTTTTATCTTTATAAAAAACTAAAAAAC 37531 28 100.0 32 ............................ TGCTTGTGATTCAAGCATTTTAATACGAATAG 37471 28 100.0 32 ............................ TTCAATTGTTGCAGTTAATGGCTGATTGTAGA 37411 28 100.0 32 ............................ TAAATCGCTCTCATGAAATTCTAATTTTTCTA 37351 28 100.0 32 ............................ ATAACGGGTTTGAAATGCTCTTCTTAATCTAA 37291 28 100.0 32 ............................ ATCGAAATCTCGCAGTATAAATCTGATGAACT 37231 28 100.0 32 ............................ ACTTGTTCGTGCTGATTTTCCACAAACTTGGA 37171 28 100.0 32 ............................ ACTTACTGCGACTATTGAAGGAAACGATTATA 37111 28 100.0 32 ............................ AGCTAGTCGTATCGCATTTTTAGCGTCTGAGC 37051 28 96.4 32 .................T.......... AGCATTTTTTTTAATTTCATAGCTGTTAATTT 36991 28 82.1 0 ..C........AT.......T.....T. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTAACCGCCGCGTAGGCGGCTTAGAAA # Left flank : TTCCCAATGCCTTCTTTTGCCAAAACGCGTCCCGCTGCCCAACCTAGTTTAAGGACAAAATCTGGCGTGATTGGATAATTTCCTACTTGCCCACGGATACCATCTGTACCAAAATAGCGTTGTTTGGACATCAAATTCTCCTTTTAAATTTTCTACTTTACTAATTATTTTGTTACTTTATGACGATAAGTATATGAATGTTATATTACTATATTCGTAGCAAAATAGCATGATTACCTATCTAGTTGAATAATTTGTTGATCGTTAATTATTGCTGATTGAAGGAAAAAATGTATTAATCACATTATTATCCTTATTAATTAGGCTGAAATTGTGATTGTGGTTATGGGTATTTGTTTCATCTTATTATAACCCTTTTATTTTTGATATATATAACCTATTGATTTTGTTATATAAAAAATCATACATAAAAAAAGGGTAGTTTTAATAAAAAGGATGATTTCTTATTTTAAAATAAGAAGTTAATTTTCTATTATTTA # Right flank : GTTGATAAAGGGATTTTATTAAAGGACATTATGTTAACCACTTAGAAAAGATAAGCCGTAAAAAAGTGGGGAGGATCCCCTTTATTTTTCCCATAAATTTTCGAGTATGTTTATAACTGGGTTCTTTTATACTTAAGTTTGCACTTTTTAGGTTGGTGGTATTGTTTGGGTTCTTCTAAATGAGTCGTGGTAAATAGTGTATAATACATTGAAAAAAAGAGCGGCAAAATACCTAAAAGCCAATCTTTATGATTAGGTAAATCACAACATAACCATATACTTAGAGTAAGAAAAGCCCAAGAGTAAGCAATAGCGAAATAGCGCATCCTGTTTAACTTTTTATTGCGCTTAAAGTCAGCAATTACAAATCTTCCGAAATATTTATCTAGTTGATAGCCTGTATATCCTCCAGCACAAAGAATAATGTATAAAAAACAGTGTTAATGGTCATTTTAATATTCCTTTAATTGATAATCTCACCGTTATCATCTCTTTGGTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13777-13448 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWGA01000053.1 Candidatus Schmidhempelia bombi str. Bimp ctg820001289434, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13776 28 100.0 32 ............................ ATCAACCGCAGTTATTGATATTCAGCCACCTG 13716 28 100.0 32 ............................ GTTTAGATTTGTCTCTACCATCTTCGATGAAA 13656 28 100.0 32 ............................ ATTTGAGCCAAAACTTTTGGTTCCACAACCTC 13596 28 100.0 32 ............................ GCGCTGGTTTGTTGTCTATAAGAGAAATAGCA 13536 28 100.0 32 ............................ TGTCTGTCTGTGTTGCCTTGTTCGATAATACT 13476 28 78.6 0 A.......T...C..AA....A...... | G [13453] ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTAACCGCCGCGTAGGCGGCTTAGAAA # Left flank : ACAATGTTCTTCCTTTCATTTATCGCCACTTTCAACAACGTTTTGCCGATCAAAAGTGGATTATCTATGATGAAAGCCGACATTACGGCTATTTTTTTAATGGTGAAACCATCGAAGAAATGACTTTATTGGATGACAAGGATTTTCTTATCAATAATAAGATAAACGCGACGTATTTAGCAGAAGATGAACCACAATTTACTGCCCTATGGCAAAAATATATTCAAGCACTTACAATACGAGAACGTATTAATCCGAAACTACAAAAACGCGCTATGCCAACGCGATTTTGGAAATATTTACCCGAAACATGGACTAAATAATAGGCATAAATAACAAGTGATATAAGGAGAACAAGCTATTATATCCCCCCTTTTATTTTTTGTTTATATAACCATTTGATTTTTTATATAAAAATTAATGTTAAAAAATAAAGGGTATTTGATACAGATTTAGCTATTTCTTATTTTAAATGAAGTAATTATTTTGATATGATCTTA # Right flank : ATGCTTTTAACTTATCTAGTTTCACTTTTGTTACTACTGTAGTATAAGCGGTTTATCAATTAATGTTGTGAATAAATGTCTATTAGGATCAGTCAATCGCCATATGGCGGTATGTGGGAGACGGTAGTCGGTAAAATTATTGAATTACTAAATAAGCGATTTGAAAAGGCATCATTTTATATGAATTTATGCGAAGTAGACCGTGTTTATAAATAGGTAATTTGAACATTTAGCACTTACTATATGCCTAGTAATGATATGTTTAGCGTAAAATAGGGTCTATAAATAATCAATATTAATAGACCCAACGTTATAGCAAATGGTTAGAAGTTATAATTAAAAGTTAATTGAGCTTGTAATTGATTATAATTATCTTTACCCCATTGGCTACCAATTTGTGCCGATGTGCTCAAATGATTAGATACGTAACTAACTAGACCTAATTTGGTTTCGATAAGATTTTTCGTGCTATCATCTTTTAGATGTTTACCGTTAAACGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCGTAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.40,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //