Array 1 185-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTL01000013.1 Enterococcus ureilyticus strain CCUG 48799 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 184 33 100.0 33 ................................. CATATTGGGACACTTGCGTTATCGTCGTTTGGG 118 33 100.0 35 ................................. AAATAAGCAAAGCATTGAATTTATCAGTACACGAA 50 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 3 33 100.0 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : GAACGTTTTGAATTTCTGCAAAAAACTGGTGTGAAAGAAGAAAAGCAATTATCACTTGATTTTGAGGAATCATTGTTAGTTGCGGAAGAAAATCCAGAAATTTTTGACCAATACTCTCATGTAGTTTGGCAAAAACGAGTATTAGGAGAAGTAACACATATTTTCAGCCATTTAAAATGGCATATTTTAGTTTTCTATGGACGAAAAATAGGAGAAACTATTACTGATGAAAATCAAGCTTGGGCAACAAAAGACGAATTTTCAAATTATGTTTTTCCAAAACCACAACAAAAAATGGTAGAACTATATAAAGAAGAATTTGGAACTACAGAATAATTTTTGGTGCGAACCCCAAGTGGACATAAAATCTCTAGGGGATCCGCACCAAAATTTTACTGATTTTAGTTAAGAAATAGACTTTTTCTCATTTTAATTTAATGTTATACTGTGTTTAGTGATGGAATAGTGGAAATATGTCATGTATTTCAACTATTTTCACG # Right flank : TATTTAATGAAGATACAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43864-43693 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTL01000014.1 Enterococcus ureilyticus strain CCUG 48799 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 43863 34 97.1 35 .................................G TAAACTGCCAGATGGAAATAATATCATCCTGTTTT 43794 34 100.0 34 .................................. GGACAATTACCGTATTTTTCCATTAGTTTGATAC 43726 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 3 34 99.0 35 GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Left flank : AGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCGACAAGTTCAAAAAATGGGACTCGTCGTTTAAGAAAAGTGGCAAAAAAGTGCCAAGATTATGGACAGCGTGTTCAAAATTCTGTTTTTGAATGTGTTGTTGATGCGACGGAGTTAACGAAATTAAAGAAAGAACTGATTGATTTAATTGATGAAGAGCTGGATAGTTTGCGCATTTATCGATTAGGAAATAATTATCAAAATAAAGTAGAGCACATAGGGGCAAAGGAGAGCTTTGATGTAGAAGCGCCACTGATATTTTAATAAGAAAATTAAGTGCGAACCCTAAGTACACATGAAATCGCTAAGGGATCCGCACCAAAATTTAGCCATTTTTATTAATAAAAAGTTGTTCCTCTCATGGAAATTTAATTTTACAAGTGTTTTTTTGTGGAAAGGTGAAAATTTGTCGTATATTTTTGCTAATTTCACA # Right flank : TAGCTGCTTCAGCTGCCAAAATATCAGTTTTTTGAGCCTAGCTCTATAACAACTTCAAATCAAAAAAATCAAAATGAAGATTTTTTCATCATCTCCTGATTGACCTGACTTAAATTACTAGGTACTCTATAAAAAAGGCGGGTGGGAGAATGAATGAAGTAGTCATTTTATTAATAGAAGATGAAGCAAGCTTAGCAAATTTCATTTCGGAGGAACTTCGGTTTGAAGGGTATAATGTTCTTTACGCCTCGGATGGTGAACAGGCATTGGAACTATTTAAACAAAATCAAAAAAGAATCACCATGCTGCTACTGGACTGGATGCTGCCAAAATATGATGGGATTACAGTTGCTAGAAGGATTCGAAGAACTAGTCAAGTACCAATCATTATGATGACCGCAAGAGATCAGTTGACCGACAAAGTGACGGGTTTAGATGCTGGTACGGACGATTATATTACAAAACCTTTTGAGATAGAAGAATTATTAGCGAGAATTCGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTATAGAGCTAGTGGATTGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 18107-18679 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTL01000018.1 Enterococcus ureilyticus strain CCUG 48799 Scaffold16_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18107 33 100.0 35 ................................. TTACTTGCGCGTCACTTTACGTTAAGACAATCTTA 18175 33 100.0 34 ................................. TCTAAATTTAATAGTCCTACTGAAATACAAGTTT 18242 33 100.0 33 ................................. TTTTGTTTCTGTAGGTGCCGCTGCCGCTGCAGG 18308 33 100.0 34 ................................. GTCTCTATGTCTTCAAGCATGCACGTATCGATAA 18375 33 100.0 35 ................................. CTAAAGTGATGGGTGCTTTAGGCTTTAGCGCGAAA 18443 33 100.0 36 ................................. ATTATGATGCTCTATTAGGGGATGGTTGTTTCGATA 18512 33 100.0 34 ................................. CTAGTCAAAAAGAAACTTTAGTAAATCAACTGGC 18579 33 100.0 35 ................................. AGGAAATGGTACAACGTATGAATTTAATTGAAGAA 18647 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 36 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : CAATGATTTTGGTGGAATCAATCATTCGACTGTTGTGATCGGGAACAATAATAAAGTTACTAATGGGAAAAATCAAGAGATTGATTGGGCGCAATTTTCTACAGAAATTAGAACAATGTTGACACAGCTTCCCCAAAATAGTGAAGAATTTCAGGCTAGTTTGAAATTACTGATAGAATCTGAATCAAAAGATCAAGGGAAAGTTGCTACTTTTTTAAAGAAACATGCACCGCAATTTACTTCGGATGTGTTTAGCAATTTAGCAAGCGCAGTTCTTTCCGATACGATCAAGAAATTAATGTTTAATATGTAGTGAATAAAGTTAAGTGCTAAAAAAATGTGGGTGCGAACCCTAAGTGTACATGAAATAGCTGGGGGATCCGCACTGATTTTTACTGAGAAATGACTTGTTTTCAGTGTTTTTCTCATCGTAATCTCATCTTATAAGTTACTTTAGTTGGAAATAGAGTATTTTTTTAGAAAATCACTCTATTTTCACG # Right flank : TCAGCTGGCAGATCATTAATTTCATTTGTTTCTTTCGGTCTCACTCTAACAAAAATACACTAAATCCTTAAAACCATCTAATTAAACAGATGGTTTTTCTATTTACGCTCATTATTTCTCAAAAATTTCCGTAAATAGCAAAGGAATTGAGTGGTCGCAACAACATTTTAAGAGGTATAATGAAAAAAGCGATAAAATAGATAGAAACGGCTATAGAAGATTCTAGAAGCGTTAAAAGGAGAGAACATATGATAAGAAATGAACTAAAAAAGAAAGCTCAAACCCATCTACATGGACATTACGGAAACTGGAGTTTGATTGCTATTTTACCTTGTGCAGTATTATTTATCTATTTCTTTTCTATAATTTTCCTGTTTCAATCGTCAGCGCACGTTAGTGATCCGTCAAATGATTATCACTCTTGGCAAGATGAGTATACTGAAAAATCGAACCGCACTTATTCTAACTATGAAAAAGGCTATGATGATGGCTATTCAGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.80,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19618-19381 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTL01000017.1 Enterococcus ureilyticus strain CCUG 48799 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 19617 33 100.0 33 ................................. ACTTTATACGTATAATTTTGACGATGAAGACTT 19551 33 100.0 36 ................................. TATATTATTTACCTTGTTAGTTAGCTCTGTTAAATC 19482 33 100.0 36 ................................. TAAAAGTGGTATTGAGGTAGAGAAAATAACAAAAAC 19413 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : TTATGACAAATGCGCAAGCAGGTGTAAAAAAGATGACGATCAGCGCTGTACATGCTGGAAAGATATTTGTTGATATTTTGGGAAATAATACAACAAAAGTTATTTTAGATGAGGCAGGTGCGGGGGATTTTCCAGTGAATGGTGGAGAAATTTCTATTTATGTAAATGAAGCTATTGTAGAACGATTACGTAATGGGTATGATAATGGGATTAATCGGAAGGAAGAATCTATATAAGTATCAAGGTGCTAGGAGCCAAATAGAGCGTGACTTATGACAAGATTGTGATTATACTATATATAAGTGATATAAGTGAAAAGCCATTTGTTCGCATTGAGATTCGGTGCGAACCATAAGTGCGCATGAAATCTCTGGGAGATTCGCACCAAATTTAGAGAGGAAAACAATATAAATAGTTGTTTTTTCTCATCGAAATCACATTTTAATGTGATTTATAATGTGTAAAAGAGCAAATAGGTACAAATTTGCTGTCTTTTCACG # Right flank : ATCGGATGCCATCTGCATTCAAAATATACTAAATGTCTCACTCTTTATTGAGTGATTTTTTTTATTTAACTTACGCGTCTATCACTAAAGAAAAAAGCAACACACGATCATTTTATTCTCTTAAAATACGAACTTAAAAAAAGAAAATATGTTCTATAAATTCCATCATTATTAAAGAATTTTCCAGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCACGACAAAAGGAAGCCGTTTTACATACAGAAGGGCCTTTACTGGTTATGGCGGGCGCAGGTAGTGGGAAAACAAGAGTATTAACACACCGCATTGCCTATCTAATTGAAGAAAAAGATGTTAATCCATGGAATATTTTAGCAATCACTTTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAATTACTAGAAGTTGGCGGAAATGATGTTTGGGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 88025-85758 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHTL01000017.1 Enterococcus ureilyticus strain CCUG 48799 Scaffold15_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 88024 33 100.0 34 ................................. CGTATACATATAATTGTATAAAGTTTCCTCCTGC 87957 33 100.0 35 ................................. GCCCCCATTACAGAACTATTATTATCGTTACTAAC 87889 33 100.0 33 ................................. AATCACCTTATTTCGTTATTTATTATATCTTGT 87823 33 100.0 33 ................................. TCCTGTTTTAGGATTATCCCATGAATAATAAAT 87757 33 100.0 35 ................................. TAAAGACGAAAGTATTATAGTTAAAGGAAATGATA 87689 33 100.0 36 ................................. AAACAGAACGGATGGAAAATCATTTAACTATATAGA 87620 33 100.0 36 ................................. ATTAGATATAAATTCATCATATCCTTATGTTATGAA 87551 33 100.0 35 ................................. CATGTAAAAATAGACAGATTAACTGTTATAGCTTG 87483 33 100.0 36 ................................. CCTAACATGCGCAAGCTGAACATCGGGGATCTGGGC 87414 33 100.0 36 ................................. AAAGATAGCCAGCTTGTCGCATCGATGAGAGCGCAG 87345 33 100.0 33 ................................. TTTTTCTATTTGAGCTTGTTCGCTCAACGTTTT 87279 33 100.0 35 ................................. ATTTACAGGGTATTATATTGTAATGTACGCAATGA 87211 33 100.0 36 ................................. GATATAATCGTGTGCCGTTAAACCTAGTTTTTTGGC 87142 33 100.0 34 ................................. TTGTGTGATTGTACTTCCTGCTAAAGCATAAATT 87075 33 100.0 35 ................................. TGGAAATAGCGACATACAAAAATCTACAGAGATGT 87007 33 100.0 33 ................................. ACAGCAAACATATCCTTAAAATTATCAATACTA 86941 33 100.0 35 ................................. AGATGCCTCAACGCTTTGTACAGTTCCCAGTTTTG 86873 33 100.0 33 ................................. TTGAAAGTGCAAGCTAAAGCATTGACTGAACAA 86807 33 100.0 36 ................................. CAGATAAATACAAGTCTAAAACGTTGCTATGTAAAA 86738 33 100.0 35 ................................. CTTACGAGCGCCACCAGAATTATAGGATACTTTTT 86670 33 100.0 35 ................................. AGAAATATTTATAGAAAAGTTACAATCTATACATT 86602 33 100.0 33 ................................. AGATATTCTAAATTGCTTAATCATTTGGCGGTG 86536 33 100.0 34 ................................. CTTGTGCATTATCATTTCTTGTCATAATCATAAT 86469 33 100.0 33 ................................. TGTACCCATTCAACAATTGGAGCTAAGTCTACT 86403 33 100.0 35 ................................. TTGTTGAAACTCTTTTGACATAGGGAAAAACTCCT 86335 33 100.0 35 ................................. TCATAAAAGCCCTGTTATTTAATCGTGTTACTCAT 86267 33 100.0 33 ................................. AACGCTTAACAATGATGATTTTACGTATATAAG 86201 33 100.0 36 ................................. AGTACATAAAACATAGTGTTCCGCGTAAGGTACAAT 86132 33 100.0 35 ................................. AAAAAAATGATCGGTTATCTAAAAGAATTAAATAT 86064 33 97.0 34 ...............A................. TTTGATATTGAAACACTTATGTATAATAAAAGAA 85997 33 97.0 36 ............A.................... AATTCAGGTTCAAACGTGACAATCTCACAATCAAAT 85928 33 100.0 35 ................................. ACGGATCAGTTAAGCAAAGTGAAAGCTGATATCGA 85860 33 100.0 35 ................................. ATTTGCTTAAGATAATCAATTTGGGCTGCAACGCT 85792 32 87.9 0 .......................TC-..A.... | CCA [85769] ========== ====== ====== ====== ================================= ==================================== ================== 34 33 99.5 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : | # Right flank : CTATTCCAATGTCAGCCTCCAAAAACTAAAATCGAACGATTTATTTTAAAAGATAGTTCTCATTACTGTAAGAAACCAAACTACTTAGTATGCAAAGTTGAAAATTATGATATAATTATGTTGATATCGGTGTAATGAACACCCAAACGAGAAATTAGTAGCTTTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACAATCCAAAGTTACAAACACGATGGACATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACGAGCGAGTATTCTTTAATCGGTGTCAACGATCATACATTGGTAACAGAGTCTGACGGGCGTCGTTGGGTTACTCGTGAACCAGCTATAGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTGGCGTCACCGTATCTTTTAGATGATGAAGCATTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //