Array 1 26785-25341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYE010000002.1 [Clostridium] symbiosum strain D43t1_170807_G12 NODE_2_length_83027_cov_30.2078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 26784 31 100.0 36 ............................... ATGGCCGTATTGAAGAACAGGATTGATTTCTGCGGC 26717 31 100.0 37 ............................... ATATTCTACAAGGGTCTACAGAAAAAAGACATCCCAT 26649 31 100.0 36 ............................... ATGCCGTTATAGAGTTCTGTAAAATTGTAGAAATTG 26582 31 100.0 37 ............................... ATGCACACGGTAAGGTATACAGGAAGTGGAAAGACAA 26514 31 100.0 35 ............................... ATAGCACCCTTATGGTAATCAACAAAACTTTTTGC 26448 31 100.0 36 ............................... ATGTCACACAGTATTGCGATTGGTGTCTTCTGGCCC 26381 31 100.0 37 ............................... ATCCGCTTTAGGCGCCGGTAATCATCCAGCAGCTTCC 26313 31 100.0 37 ............................... ATTTTCTTCAAACAAGTCTTCGAAGGAGCGCGGTTCT 26245 31 100.0 36 ............................... ATCCCATTATAAAGTTCCGTAAAATTGTAGAAATTG 26178 31 100.0 38 ............................... ATTATTTAACAGGTAGGGATAGATAATTGACGCATTGT 26109 31 100.0 37 ............................... ATCTTGAAGCACAACGTCATTGTTTATTTTCATAACC 26041 31 100.0 36 ............................... ATTCTCCACTTGCACCAAAACTTGTTGTAGCATCTC 25974 31 100.0 35 ............................... ATAATTATTCTGAAATGACCGAAGCCCTACGCGAC 25908 31 100.0 40 ............................... ATGATGCGGTCCAGTATCTCCAGTTTCTTGTATGCATCAA 25837 31 100.0 35 ............................... ATCGGCGTATCGGCTCCCTTCTGCGCTTTTGTCCC 25771 31 100.0 37 ............................... ATTAATAAATCACTTTGCTGCCATTTTCTGTTTTAAC 25703 31 100.0 35 ............................... ATACCGGAAATCCTCTGGTAACGCTCCACTGCAGC 25637 31 100.0 36 ............................... ATAATTCCGGAGGCTGAGTTGATACAGCGTCACAAG 25570 31 100.0 36 ............................... ATTTTAATCTGGCTGTCTCTGCGGCCGTTACTATCC 25503 31 93.5 35 ...................T.......T... ATAATACTGTCACGTAAAACATCCAGAGCAATACT 25437 31 93.5 35 ...................T.......T... ATGCGCTGGAGAGAAAAAATATTTTATATAAAAAG 25371 31 83.9 0 ........A..........T.A.....TT.. | ========== ====== ====== ====== =============================== ======================================== ================== 22 31 98.7 36 GTCGAGGCTCGCGAGAGCCCTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAATAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGAAAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : ATTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAGGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACCCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCCTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27901-27532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYE010000002.1 [Clostridium] symbiosum strain D43t1_170807_G12 NODE_2_length_83027_cov_30.2078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 27900 33 100.0 34 ................................. ACCGAACATCGGGCAGATATTCTGGGAGTTGATG 27833 33 100.0 35 ................................. ACTTTCCCCAACGCTGCCATCACCAGGTCCAGCGC 27765 33 100.0 34 ................................. CGTGAATGTTTCTGGATACTGTGCTGTCGGTATC 27698 33 100.0 34 ................................. CCTTGCCGTGGTCACAGAACAGCCTGATAAGCTG 27631 33 100.0 34 ................................. ATCGGTCTCCCCGGTGAGCTGGTGGAACTGTATT 27564 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATTGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAACTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTATACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTTACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAATAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 11131-20864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMYE010000079.1 [Clostridium] symbiosum strain D43t1_170807_G12 NODE_79_length_23781_cov_24.6382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 11131 32 100.0 33 ................................ TTGTGCTTGCTTCGCTGTTGCGAATCATTTCGC 11196 32 100.0 34 ................................ GAAGAACTTGAAGCGGCAAGAGCAGACAAGCAGG 11262 32 100.0 35 ................................ TTCCGTTCTGTCATAGTTGTAAATTGGATTGTATT 11329 32 100.0 36 ................................ AAACGCATCCAGCCTAATATTCAGCGCCGTAATCGT 11397 32 100.0 34 ................................ GCCCTAACAGAGAGGAGAAAAAGTAATGACAAAG 11463 32 100.0 33 ................................ ACAACGGCAGTTGAAAAACTGAACATTCTCTTA 11528 32 100.0 34 ................................ CATATCATTTAACAAAGACACGCTAGCATATATT 11594 32 100.0 34 ................................ TGATTCATAAACGACCAACGTCCAATCATAAATT 11660 32 100.0 35 ................................ TACCTTGTATGCACAAGGTTTTTGCCCTGAAAATC 11727 32 100.0 34 ................................ TGAACAACGGATTCGTAATGATACAATGCGTCGG 11793 32 100.0 33 ................................ CTGCTATTGTGACCGTTAAACGTCCGTTCTTTA 11858 32 100.0 35 ................................ CTTATTTATTGTTTACAATTGTTGGCGGATTAATA 11925 32 100.0 35 ................................ CAAAAAGGATTACAAATCTATAATAACAGCCTTTG 11992 32 100.0 34 ................................ AGCAGAACTTGAAGCGGCAAGAGCGGACAAGCAG 12058 32 100.0 35 ................................ AGAAACGTCTCGCCCGGTTCGTTGGAACCGAGTGG 12125 32 100.0 34 ................................ AGCCAGAAACGCCGGAGGATATACTGGCAAGTAT 12191 32 100.0 34 ................................ CGATAGAAGAAGCATAATCAATACAGCCTTGAAT 12257 32 100.0 35 ................................ AGTATGTGTTACGCAGTTCTCTTGCATCAAACGGC 12324 32 100.0 34 ................................ CCATTCAATTTTATTGTCGGAGGAAGAGGAACAG 12390 32 100.0 38 ................................ CGCCCAATGGACTTCTTCCGGCATCGGGAAACGGAACG 12460 32 100.0 35 ................................ AAGGGGCTAAAGAAGCAGAAGAGGTCAAGAAGATT 12527 32 100.0 33 ................................ TATTTAAGTGTCGCATATAGAGTTCCACTAACA 12592 32 100.0 34 ................................ TTAAACAAGCATCCGAAGCGATATTACAAATCAC 12658 32 100.0 33 ................................ TGTGCCTATTTTCTGCGGTAAATGCTTCAGAGG 12723 32 100.0 35 ................................ ACTGACTTTCCTCCTGTTCATCTATAATCCTTTTG 12790 32 100.0 35 ................................ TCTGCTAGACTTTGATGCTTTTCTGGGTATTCTCC 12857 32 100.0 37 ................................ CATCCATACCCTTTGTCGTCCGGATGGTCAATAGCCT 12926 32 100.0 34 ................................ CTGGTCGCCTGCATCCTCTATAAATTCAACTATA 12992 32 100.0 36 ................................ TTTCTGATTGTGCTCCCTCTCCGTACAGTACACCAG 13060 32 100.0 34 ................................ AGTCTCGAGTTATCCAGAACGGCCGATAACCTAT 13126 32 100.0 34 ................................ AACCGCTTTTATATAAGCAGAAGAGGGGCTTGCC 13192 32 100.0 33 ................................ CTGCTTGTTCCGCTAGACTTCCTGCAAGTTTGG 13257 32 100.0 33 ................................ CCTTATCCGTTTGTTGGGTATAGGGGCAACAAG 13322 32 100.0 33 ................................ CAATTTATCAAGGGAATCCATCCCGCCATTCAT 13387 32 100.0 35 ................................ ATACCCCCTTCAGGCCGATTGTAATGTCCGTCACC 13454 32 100.0 33 ................................ CTTTTCATGGCTTAAAATAAGGGAGAGCCAATC 13519 32 100.0 34 ................................ AGTTTATTTTCATATACATCAAATATCCCAGATG 13585 32 100.0 33 ................................ CACAGATTCTTTCCATCAATGCGTTTCAGGCTG 13650 32 100.0 34 ................................ CGGGAACGCCCAAGAGATATTAGACCGGGTATAC 13716 32 100.0 34 ................................ AGTCAAATTTGAATAAGGAGGAAATATGAGTATA 13782 32 100.0 33 ................................ ATATGTACCCAACAACTATCCCGGAAGTAAAGA 13847 32 100.0 33 ................................ ATGGCTATTGTGGAAGCGGAAAAGAGTAAGGTG 13912 32 100.0 34 ................................ CTAAATCATCAGCTTGTAAGTAATCCTTACATGT 13978 32 100.0 34 ................................ ACAGAAGCTCAGACGTAACGACGGAGTGGATCAT 14044 32 100.0 34 ................................ AGCGTTTCGGATCGTGTTTCCCTGTGAATTTTTC 14110 32 100.0 36 ................................ ATTTTTTCATACAATGACTTAGCAGGGAGTGATATA 14178 32 100.0 33 ................................ GGCTATATTGCAGAACAGGATTGATTTCTGCGG 14243 32 100.0 33 ................................ GAATAGCTAAAGCCGGACGGAACATTTTTACTT 14308 32 100.0 34 ................................ CATCCATACCTTTTGTCGTCCGGATGGTCAATAG 14374 32 100.0 34 ................................ GGGAACCGTCACGTTTGAATGGGAATACAATGCT 14440 32 100.0 33 ................................ ACATCTTCCGGCCGGTGGGGTTATACCGGCGTT 14505 32 100.0 34 ................................ TTTTTGTGATGCTGGTGGTGTTAGAACAAAAGCA 14571 32 100.0 35 ................................ TTCTTTTCCTGTTTTGTTTTCTGTGCCGTTTGATT 14638 32 100.0 34 ................................ CTTATATATTCTTCAATCATTCGCTGAATATATT 14704 32 100.0 36 ................................ CGCAAGGGATTTAAATCCATTAATCGAAGCTGGCAG 14772 32 100.0 33 ................................ CCAATATGATATATCGATGACCAGCTTTTAAGG 14837 32 100.0 34 ................................ TGACAAAGGCTGGAATATTGGATGCGCAAAGATA 14903 32 100.0 35 ................................ AGCAATCTGCAATGCTCCCTGGTCGTCCGTTACCA 14970 32 100.0 34 ................................ TTCTTGTATAGTCATCCAACGTTTTCTGATCCGC 15036 32 100.0 34 ................................ CGATTTGATAGGTCAATACTATCCCGGTTAAGCT 15102 32 100.0 33 ................................ CATACGCCGGATGTTCGGAATGTCCTGGCCGTT 15167 32 100.0 33 ................................ CATTCAGATAGGCCGCTTGTGTTTGGTCCAGTG 15232 32 100.0 33 ................................ AAAAACCGTTGGAAAGTCAACCCGTATTTTGTT 15297 32 100.0 33 ................................ TGCTTCTTTGGACTTCTTAAAAATGTCTTTTAC 15362 32 100.0 35 ................................ ACTTTCCCCGATGGCCACCAGCCGGTTCAACATCC 15429 32 100.0 35 ................................ CTTCATAAATTCATACAGGTATTTGGATGAATCAA 15496 32 100.0 35 ................................ TTTTTTAGAAATTACGCCTGTCAAAATAGCTAAGC 15563 32 100.0 34 ................................ GACGATGGAAGAAACACACGTTACGCCGGGGAGT 15629 32 100.0 33 ................................ CGATGTGCTGCGGCCGTCCCAGATGTCAACCCG 15694 32 100.0 34 ................................ ACCATCAGAATCTGCATGATAACGTCAGAAAAAA 15760 32 100.0 33 ................................ ATTAGGCTTATTAGATTTATTAGATGCATAGTC 15825 32 100.0 34 ................................ CTTTCATTTGTATTTCAGCCTGACGGGGCTGATA 15891 32 100.0 33 ................................ TGCCACATTTTCCATATTGTCTGCCAGCGTTCC 15956 32 100.0 33 ................................ CTTTTCCCGGACAAAAATCGTAAACCGGATAAA 16021 32 100.0 33 ................................ AAGTAAAAGCTGTTGCATCCATGGACGGGCCGA 16086 32 100.0 34 ................................ CCTTCAATTCTTTCATCCTACCACAATTCCAGTA 16152 32 100.0 33 ................................ TCCGACCGGATACGGTTTCCCATCAAGATCACG 16217 32 100.0 33 ................................ CTTAATGAGGAGGTGAGGGAGTGAACGATTTTG 16282 32 100.0 34 ................................ TTTGCAGTAGAAAACAATCTGGAACATGTGTTGA 16348 32 100.0 34 ................................ ATCAAAAAACAGGTATTTGATTGCTTTGGATGCC 16414 32 100.0 34 ................................ CGTAGTCTGCCGCTACCAGTTCCCGGCTGTCGAA 16480 32 100.0 34 ................................ CATAGCGGCGTTCCGCGTCTCTGGCCGCCTCCTG 16546 32 100.0 33 ................................ TGCCATAGCTTTAGCAATTCCCACATAGGTCTT 16611 32 100.0 33 ................................ ATACTTTCTCAACCAGTCGGAAAGACTGGTCAG 16676 32 100.0 33 ................................ TTGTCATCATGGTTCCACATTTCGCGCAATAAA 16741 32 100.0 32 ................................ TACCATAGGGAAGGAGGGCACCACATGGCAGT 16805 32 100.0 34 ................................ CTTATCCAGTCGTTTGTAGCCCCGTTCTCCCAAC 16871 32 100.0 35 ................................ CCTTTCTTTAACATAAGATCATGGAACCGATCCGA 16938 32 100.0 34 ................................ CCGTACCGGATTGAGGTAAAGGAGTATCACAGCA 17004 32 100.0 35 ................................ TGATACCCGGCCGCCGGAGCTGTAAAGGAGATCGA 17071 32 100.0 35 ................................ AGCATTTATTCCACCGAAGACTATATCATCAGCGC 17138 32 100.0 34 ................................ AATTTACTCCAAACACCTTAATTTTCCCCTTGGT 17204 32 100.0 34 ................................ CTTCCTTATGGTAGAGTTTATGTTTGACTGGTTG 17270 32 100.0 33 ................................ AAACAACAATGCAAAATGGCGAGATGTCTTATT 17335 32 100.0 35 ................................ GATTGCTTTGCACGCACGTTCTTTCTGTCCTTTTT 17402 32 100.0 34 ................................ TGCGTATCGCAATATCAACTTAACAGTTGCTGTT 17468 32 100.0 33 ................................ GTATTCCAGGGTAACGCCGCCCTGCTGGTATCC 17533 32 100.0 34 ................................ CCAGCAGATGTTGGAATAGCGCCTGTCTGCTTCC 17599 32 100.0 35 ................................ ATCGTCCGGATCCTGACGGCGATTGTCCTGGCCGA 17666 32 100.0 34 ................................ TGCACTTTCGCGGCCTTTTATACCAAACTTAAAC 17732 32 100.0 33 ................................ CTTTTAACGCTGTCCCCTTCTGGATAATCCCGT 17797 32 100.0 34 ................................ TGTGGCTTGCCTGCGTTACAAAGTAGATCCCATC 17863 32 100.0 36 ................................ TTCCCTTAACTGCCGGACTCTTCGGGAGCTGATGCC 17931 32 100.0 33 ................................ ATGAAAGAGATTAACAGCGTTCGATTCCGGGAG 17996 32 100.0 34 ................................ AATATTTTCATAGGCATTTCCAGACCAGTATGGC 18062 32 100.0 33 ................................ CATCGCTTCTTTGTATTTTCTTCTTATCATTGC 18127 32 100.0 35 ................................ AGATACTACAGGAAATACCAGTGAAAACCGGGCTT 18194 32 100.0 34 ................................ TAGTTCTCCGTATTCAGTCTGGCGTTCCATTACC 18260 32 100.0 34 ................................ AATATAACGGTTCGGCAGCGTCCGTCCATTAATT 18326 32 100.0 33 ................................ ATAAAAGTGTACGGTCTGCCTATGGTCAAACTG 18391 32 100.0 35 ................................ ATGCTAGATATCAAACTGAAAGAAGCACAGGTTGG 18458 32 100.0 34 ................................ ATTTTTCGTTTTAAGCAGACATCAGTAATGATTC 18524 32 100.0 35 ................................ CTATCACAGTTTAAAGACTATTACCCGGGAGTTTG 18591 32 100.0 34 ................................ AAGTACTATTCCGTCACCTTTATAAGGTGCAACA 18657 32 100.0 33 ................................ GCTACACTTGGGTCAAACTGGAATGGTTTCGCC 18722 32 100.0 34 ................................ AATACCGGTAACCACAGCTTTAAGGAGGATATAC 18788 32 100.0 35 ................................ TACCATAAGGAAGGAGGGCACCACATGGCAGTAGT 18855 32 100.0 34 ................................ ATTGTTCATTACTTCAACATAAATCGAGGATAGC 18921 32 96.9 33 ....G........................... ATACCAGTACCTTGCCATTTCCTGCCTGTCTGG 18986 32 100.0 35 ................................ ATATAAAATGGGTCAAGGTCAAACGGTTCCGGTAA 19053 32 100.0 34 ................................ CCACCTACCGCAAATTCCATCGACCAGGAGCTTT 19119 32 100.0 33 ................................ TGGTTAAGTTCACGCCTTCACCTTCATTATACT 19184 32 100.0 35 ................................ ACGGATATGCGCACGATGACGGTTACGGCCAGCTT 19251 32 100.0 33 ................................ AGTCAGCAGGTCCTATATTAAATAGATGGCTGG 19316 32 100.0 32 ................................ ATTATATCACCCGTTATAATCTGCAGCTTCTT 19380 32 100.0 34 ................................ CAGTTAAATCCCTGCCCCATAAAAAACCACTGCC 19446 32 100.0 35 ................................ TAAATTTTCAATTAATCATCCAATTTTCGCCCACA 19513 32 100.0 33 ................................ ATCGACAATAATCGGTTTCCATCATAAAATTCA 19578 32 100.0 34 ................................ GGAGGTATTTGTACAGGCCTTTGGCTTGGAGACG 19644 32 100.0 33 ................................ GCTTATCCAGTCGTTTGTAGCCCCGTTCTCCCA 19709 32 100.0 32 ................................ GTCCCACAGTGCCGTTGTCAACGCATCCTCCA 19773 32 100.0 35 ................................ CAATTTTTAGCCCCCCGATCATATTGACCAATAAC 19840 32 100.0 34 ................................ AATGACGGTTTCCGGGAAACTATATGGTGCGCAA 19906 32 100.0 34 ................................ TGCTTGAGATAATATTGGCATGCCTGATATAGTC 19972 32 100.0 34 ................................ CTGATATAGCGTCACAAGGATATACACGAAAACT 20038 32 100.0 34 ................................ TCTTCTGGCGGAGATGCTGACGCTGCCGGAGTCG 20104 32 100.0 34 ................................ ATTTGAAACGATGATACAGTTTATTGCGCAGGTA 20170 32 100.0 34 ................................ ATCCAACGGACATTGAGTAATATCCAGGATAAAA 20236 32 96.9 34 T............................... TTCGATTCGCATCCCCCGGTTTAAAAGGTCCGTT 20302 32 100.0 33 ................................ ATCCAAACGACACATTTCTACAAGCTGGCTGGA 20367 32 100.0 34 ................................ TTTTTGGTTATCAATTTACGCTCTGGCAGGTTTT 20433 32 100.0 33 ................................ ATCCAAACGACACATTTCTACAAGCTGGCTGGA 20498 32 100.0 36 ................................ TACATTTGTTACCAGATGTATTTTGGGAGTCAGAAA 20566 32 100.0 34 ................................ CTATTGCGATTTCCATCAGCCCGAACAGGATATC 20632 32 100.0 35 ................................ CCGTAAAAAGGGCAAGGTAAAAATATGTGCGCCAT 20699 32 100.0 34 ................................ ACTGTCGATTGCATATGCCAGCACCTGAGAAACT 20765 32 100.0 36 ................................ TAAGTTTCGCGGTTGGCGAGAAATTAACGGTTTTGT 20833 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ====================================== ================== 148 32 99.9 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGTCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGTGAAGTGTATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //