Array 1 295-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXH01000020.1 Salmonella enterica strain BCW_6237 NODE_20_length_84456_cov_3.79751, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 294 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 233 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 172 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 111 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 50 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTGATCACAGAACTGACCGGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 161608-159198 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXH01000006.1 Salmonella enterica strain BCW_6237 NODE_6_length_178835_cov_3.92595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161607 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 161546 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 161485 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 161424 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 161363 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 161302 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 161241 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 161180 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 161119 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 161058 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 160997 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 160936 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 160875 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 160814 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 160753 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 160692 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 160631 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 160570 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 160509 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 160448 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 160387 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 160326 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 160265 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 160204 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 160143 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 160082 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 160020 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 159959 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 159898 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 159837 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 159776 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 159715 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 159654 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 159593 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 159532 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 159471 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 159410 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 159349 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 159288 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 159227 29 100.0 0 ............................. | A [159200] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178791-178153 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXH01000006.1 Salmonella enterica strain BCW_6237 NODE_6_length_178835_cov_3.92595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178790 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 178729 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 178668 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 178607 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 178546 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 178485 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 178424 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 178363 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 178302 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 178241 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 178180 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTGATCACAGAACTGACCGGGTACACCATACC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //