Array 1 273-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797594.1 Corynebacterium sp. HMSC055A01 Scaffold470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272 29 96.6 32 ............................C CGATAGAAGATCAAGTCAGTCCCGGCGTTAGA 211 29 100.0 32 ............................. CTCGACGGCCCGGAGAACTCCGCATCCACCCC 150 29 100.0 32 ............................. GTAGACACCGAAGCGTGCCTGCACTTTTGGGC 89 29 96.6 32 ............................C TGGGCGGACCACAAGAACGATGAAGGTGGCAC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : | # Right flank : C # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 177774-177985 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177774 29 100.0 32 ............................. TTTCTTGGAAAGTTCACTCGTGCCCTTGCTAG 177835 29 96.6 32 ............................G CTTGGATGCCGGAGATGTCCATGGTTTTTCGT 177896 29 96.6 32 ............................A GGCTAAGACTGCGGAGTGGGGTCAGCCGTTCT 177957 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AACTCGAAGTCATTGCTTCAGGAGTGAATTGGGCTGAAGAGGAGACACTTTCGTGATCGTTCTTGTCGTAACTGCATGCCCCGCTGGGCTTCGGGGCGACTTATCAAAATGGCTGATTGAACTAACATCGGGCGTCTTTGTCGGCCGCCCTTCCGCACGAATTCGTGACTTGTTGTGGGAGCGAACCGTTGAACTGTGTAAGGACGGAAGAGCATTACTAGTCTATTCGGCAGCAAACGAACAGGGTTTAGAATTCCGGACTCACCGGCATCATTGGCAGCCACAAGACTTTGATGGTGTCACGCTCATGGTTCGTCCTGCTCCTGGAAGCAAGAAAACTCAGAACAGGACTGGTTGGTCACAAGCCCGACGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTACGGCTCCTTTATACGCTGCTCAGCAAGT # Right flank : CTATGCCGCAGCCTCATTGATTACTACAGGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCGGTGCGGGCCTTACCCTTTTCTGTGTACCCGTGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGGCACGCCACGATGACGATTGCTCCATTCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCTTACATCGAGTGGCTCTTTGCCTGGGGCGACTGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGACGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 178144-178294 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178144 29 93.1 32 N...........................C GGTGCGGGCCTTACCCTTTTCTGTGTACCCGT 178205 29 100.0 32 ............................. GGGCACGCCACGATGACGATTGCTCCATTCCC 178266 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : CGGATTCGTTCGGCATACCAGAAACAGAAACGAAAATAGCTGAGGAACTCTAGACAGGTTCTGTGTCTCTTCCGAGAAGAAGCCGTATGTAAACTGAGGGTACGGCTCCTTTATACGCTGCTCAGCAAGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTTTCTTGGAAAGTTCACTCGTGCCCTTGCTAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTTGGATGCCGGAGATGTCCATGGTTTTTCGTGTGCTCCCCGCGTGAGCGGGGATGAGCCAGGCTAAGACTGCGGAGTGGGGTCAGCCGTTCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTATGCCGCAGCCTCATTGATTACTACAGGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTACATCGAGTGGCTCTTTGCCTGGGGCGACTGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGACGGCGACCCCCGCCCCGACACGTCATGCCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCACATGCGCAGCCTGCCACGCGCCAAAGACCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCAAAGTGGTCACGGATGTTCTTTCCGTACACGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCGATT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 178451-178662 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178451 29 96.6 32 N............................ ACGGCGACCCCCGCCCCGACACGTCATGCCAG 178512 29 100.0 32 ............................. GCACATGCGCAGCCTGCCACGCGCCAAAGACC 178573 29 96.6 32 ............................C TCAAAGTGGTCACGGATGTTCTTTCCGTACAC 178634 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : CGTTCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTATGCCGCAGCCTCATTGATTACTACAGGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCGGTGCGGGCCTTACCCTTTTCTGTGTACCCGTGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGGCACGCCACGATGACGATTGCTCCATTCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCTTACATCGAGTGGCTCTTTGCCTGGGGCGACTGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCGATTATCGAGCTGGTGAATCGGATTCGCAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCCAGTCTGAGGATGCCGCGCTGTCCACCAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAGCATGATGTCGCAACGCAGAAACATTGACTGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGTTGTCGCGGAGCTAATCGCTATGTCAATCAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGTA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 178760-178971 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178760 29 96.6 32 N............................ CGATTATCGAGCTGGTGAATCGGATTCGCAAG 178821 29 100.0 32 ............................. CCCAGTCTGAGGATGCCGCGCTGTCCACCAAG 178882 29 100.0 32 ............................. GAGCATGATGTCGCAACGCAGAAACATTGACT 178943 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : ATTCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCTTACATCGAGTGGCTCTTTGCCTGGGGCGACTGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGACGGCGACCCCCGCCCCGACACGTCATGCCAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCACATGCGCAGCCTGCCACGCGCCAAAGACCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCAAAGTGGTCACGGATGTTCTTTCCGTACACGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCGTTGTCGCGGAGCTAATCGCTATGTCAATCAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGTAAATCGAGGGGTGGTTAGGAGGCTTGCCCGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGTGTCGTACCGATTGAGGTAGTCGTCGGGGTTGTGCTCCCCGCGTGAGCGGGGATGAGTCGGCCCCGCATGGATCACCGGCGAGCTCTTCCCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCTCCCCGCGTGAGCGGGGATGAGCCCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 179131-179281 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179131 29 100.0 32 ............................. TAAATCGAGGGGTGGTTAGGAGGCTTGCCCGG 179192 29 100.0 32 ............................. GTGTCGTACCGATTGAGGTAGTCGTCGGGGTT 179253 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : CACGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCGATTATCGAGCTGGTGAATCGGATTCGCAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCCAGTCTGAGGATGCCGCGCTGTCCACCAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAGCATGATGTCGCAACGCAGAAACATTGACTGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGTTGTCGCGGAGCTAATCGCTATGTCAATCAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCCCCGCATGGATCACCGGCGAGCTCTTCCCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAACGCACCCGCCTGCGCGGAGTGCCCCGCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCATTTGACCACCGAAACCCCGAGGAGGACACAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACCAGACGGCAGAACAACCGACTGATTAGCCCGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCGGTATC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 179441-179591 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179441 29 100.0 32 ............................. CAACGCACCCGCCTGCGCGGAGTGCCCCGCAA 179502 29 100.0 32 ............................. ATTTGACCACCGAAACCCCGAGGAGGACACAA 179563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CTGTGCTCCCCGCGTGAGCGGGGATGAGCCGCGTTGTCGCGGAGCTAATCGCTATGTCAATCAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGTAAATCGAGGGGTGGTTAGGAGGCTTGCCCGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGTGTCGTACCGATTGAGGTAGTCGTCGGGGTTGTGCTCCCCGCGTGAGCGGGGATGAGTCGGCCCCGCATGGATCACCGGCGAGCTCTTCCCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CACCAGACGGCAGAACAACCGACTGATTAGCCCGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCGGTATCGTCGCCGGTGACGCGTAGCTTGTGCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCAGCAAGGTATTCGACACCCGCATCTTTAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCTCCTCAAGCTGACCGGCGACTCACACACCGGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCCCGCGAGGGCGGTGATGCTGAGAAGGTTGCGTGCTCCCCGCGTGAGCGGGGATGAGCCTCCTCAAGCTGACCGGCGACTCACACACCGGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCCCGCGAGG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 179747-180263 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 179747 29 93.1 32 NN........................... GTATCGTCGCCGGTGACGCGTAGCTTGTGCCC 179808 29 96.6 32 ............................C CCAGCAAGGTATTCGACACCCGCATCTTTAAG 179869 29 96.6 32 ............................T CCTCAAGCTGACCGGCGACTCACACACCGGTG 179930 29 100.0 32 ............................. GCCCGCGAGGGCGGTGATGCTGAGAAGGTTGC 179991 29 96.6 32 ............................T CCTCAAGCTGACCGGCGACTCACACACCGGTG 180052 29 100.0 32 ............................. GCCCGCGAGGGCGGTGATGCTGAGAAGGTTGC 180113 29 100.0 32 ............................. CTGATTAGCCGCGCCGAGGTGGTTGATTACGA 180174 29 96.6 32 ............................C CCGACCGGCTGCTGCACGGACGCTGTAATTCA 180235 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : GGGGTTGTGCTCCCCGCGTGAGCGGGGATGAGTCGGCCCCGCATGGATCACCGGCGAGCTCTTCCCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAACGCACCCGCCTGCGCGGAGTGCCCCGCAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCATTTGACCACCGAAACCCCGAGGAGGACACAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACCAGACGGCAGAACAACCGACTGATTAGCCCGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGTGGGGCGGGGGCAACCATGGGGCCAGATTTAGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAGAGTCCCCGGATGCAGGGACACCCGGGGACGTGCTCCCCGCGTGAGCGGGGATGAGCCGACCAAGGGTTAATCCTCACCTAGTGGGTCTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTGGGATTGGATTACCTACGGGTTGATACTTTTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTAGCCGGTTGGACAACTAGGAGCCAGGGGCACGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 180362-180634 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180362 29 100.0 32 ............................. GTGGGGCGGGGGCAACCATGGGGCCAGATTTA 180423 29 96.6 32 ............................G GAGAGTCCCCGGATGCAGGGACACCCGGGGAC 180484 29 96.6 32 ............................G ACCAAGGGTTAATCCTCACCTAGTGGGTCTTC 180545 29 100.0 32 ............................. TGGGATTGGATTACCTACGGGTTGATACTTTT 180606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CTTTAAGGTGCTCCCCGCGTGAGCGGGGATGAGCCTCCTCAAGCTGACCGGCGACTCACACACCGGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCCCGCGAGGGCGGTGATGCTGAGAAGGTTGCGTGCTCCCCGCGTGAGCGGGGATGAGCCTCCTCAAGCTGACCGGCGACTCACACACCGGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCCCGCGAGGGCGGTGATGCTGAGAAGGTTGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGATTAGCCGCGCCGAGGTGGTTGATTACGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCGACCGGCTGCTGCACGGACGCTGTAATTCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CTAGCCGGTTGGACAACTAGGAGCCAGGGGCACGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGTCAGCGCGGAAGGTAACCCACAGATGCGGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGTGATGAGGGTGCCGCGTCCAATGTGTCTAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCCGCCGCCACATGCCGCAAACCATGAGGCGTGTGCTCCCCGCGTGAGCGGGGATGAGCCGTTTTGAGGACTTTGACCGTCACGCCGAGTTCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 180791-181002 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180791 29 96.6 32 N............................ TCAGCGCGGAAGGTAACCCACAGATGCGGCTC 180852 29 100.0 32 ............................. GGTGATGAGGGTGCCGCGTCCAATGTGTCTAA 180913 29 96.6 32 ............................C CCCGCCGCCACATGCCGCAAACCATGAGGCGT 180974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGTGGGGCGGGGGCAACCATGGGGCCAGATTTAGTGCTCCCCGCGTGAGCGGGGATGAGCCGGAGAGTCCCCGGATGCAGGGACACCCGGGGACGTGCTCCCCGCGTGAGCGGGGATGAGCCGACCAAGGGTTAATCCTCACCTAGTGGGTCTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTGGGATTGGATTACCTACGGGTTGATACTTTTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTAGCCGGTTGGACAACTAGGAGCCAGGGGCACGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTTTGAGGACTTTGACCGTCACGCCGAGTTCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCCGCTCACGCGGGGAGCACCAGTCCATCGCGGCTGTTTCGTCATCCTCGTCAGGCTCATCCCCGCTCACGCGGGGAGCACTGTCACGGAACTGTTGTTCGTCAACGCTCATGCGGCTCATCCCCGCTCACGCGGGGAGCACCCTTGCGCGATGACCTTGCCGGCCTCGTCTGTCGGCTCATCCCCGCTCACGCGGGGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCGGTGACTA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 10 181369-181218 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181368 29 96.6 32 N............................ ACAGACGAGGCCGGCAAGGTCATCGCGCAAGG 181307 29 100.0 32 ............................. CATGAGCGTTGACGAACAACAGTTCCGTGACA 181246 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : NNNNNNNNNCTCATCCCCGCTCACGCGGGGAGCACTGGGGTTATTCCTGCTGGCACTAGTGGCCTGTGGGCTCATCCCCGCTCACGCGGGGAGCACTCCCACCTGTCACGCACCAACAACGCGGCCCGCGGCTCATCCCCGCTCACGCGGGGAGCACCTACAGGCTCAGCACAGAAGCAGACCCCCGGTGGGCTCATCCCCGCTCACGCGGGGAGCACACCTGGCGGACGCGGAGCAGGCGGGAATGCTCGTTGGCTCATCCCCGCTCACGCGGGGAGCACAGGCGCTCACCATCCTTAACCTTCTGGATGCCGGGCTCATCCCCGCTCACGCGGGGAGCACTCCATCTCGGGTTGCCCCGTGCACGTAGTCACCGGCTCATCCCCGCTCACGCGGGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GACGAGGATGACGAAACAGCCGCGATGGACTGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATCCCCGCTCACGCGGGGAGCACTGAACTCGGCGTGACGGTCAAAGTCCTCAAAACGGCTCATCCCCGCTCACGCGGGGAGCACACGCCTCATGGTTTGCGGCATGTGGCGGCGGGGGGCTCATCCCCGCTCACGCGGGGAGCACTTAGACACATTGGACGCGGCACCCTCATCACCCGGCTCATCCCCGCTCACGCGGGGAGCACGAGCCGCATCTGTGGGTTACCTTCCGCGCTGACGGCTCATCCCCGCTCACGCGGGGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 11 181466-181862 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV797598.1 Corynebacterium sp. HMSC055A01 Scaffold624, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 181466 29 89.7 32 NN..........................G GTGACTACGTGCACGGGGCAACCCGAGATGGA 181527 29 100.0 32 ............................. GGCATCCAGAAGGTTAAGGATGGTGAGCGCCT 181588 29 96.6 34 ............................A ACGAGCATTCCCGCCTGCTCCGCGTCCGCCAGGT 181651 29 100.0 32 ............................. ACCGGGGGTCTGCTTCTGTGCTGAGCCTGTAG 181712 29 96.6 32 ............................G CGGGCCGCGTTGTTGGTGCGTGACAGGTGGGA 181773 29 100.0 32 ............................. ACAGGCCACTAGTGCCAGCAGGAATAACCCCA 181834 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================== ================== 7 29 96.1 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : TGAGGCGTGTGCTCCCCGCGTGAGCGGGGATGAGCCGTTTTGAGGACTTTGACCGTCACGCCGAGTTCAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCCGCTCACGCGGGGAGCACCAGTCCATCGCGGCTGTTTCGTCATCCTCGTCAGGCTCATCCCCGCTCACGCGGGGAGCACTGTCACGGAACTGTTGTTCGTCAACGCTCATGCGGCTCATCCCCGCTCACGCGGGGAGCACCCTTGCGCGATGACCTTGCCGGCCTCGTCTGTCGGCTCATCCCCGCTCACGCGGGGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCGGCGAAATGGAGCGTCAAGGTTGTACCCGGCGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCTCCACGGATACGGTGCGCAATGATGTGAAAGTGCTCCCCGCGTGAGCGGGAAAGTGCTAGGACTGATATCGTCGGAAGGTGGTCCACATAGATGACGGAGAGTACGCCCCACGCATGTGGGGATAGCTCCATGGCAGGCGTTGCTAAGGCCGCAATGGCGGGGCACGCCCCACGCACGTGGGGATAATCCGGGTAGTGCTCACCGCGTAAACGGGTGTGAGTTTGTATAAACCGTTGGAATCGTTATGTCCAACGTGGGGTTGGGCGATTATACCCAATCGAGGGTGATTTCGGTAGGATGCCCTGTCCGTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //