Array 1 9013-11158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAQ01000033.1 Cardiobacterium hominis strain 599_SSED 533_23450_452231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9013 32 100.0 34 ................................ ACCGTGGCGGCGACGGAAAAATGGAATGACAAAC 9079 32 100.0 33 ................................ TAGGAGCCACCCATGACCGACCCGAAAAACGCC 9144 32 100.0 34 ................................ GTCAAGGGCGTGCTGATAGCCTGCCCGGAAAGCC 9210 32 100.0 33 ................................ TCCACCTGCGGATAATGCGCGGCAACGCAGTGC 9275 32 100.0 35 ................................ TCCATCTCTCCGGCAATGCGCATCGCCTCGGTGAG 9342 32 100.0 34 ................................ GCCTTTAGCGTTGATGATGTAATACATGTGCTAC 9408 32 100.0 35 ................................ GGGTACGGCGGCGTAATCGCCCGCGTTGAGTTTGC 9475 32 100.0 34 ................................ GAGGCCTATGAGATCGGGGCGCTCGACCCAACCG 9541 32 100.0 33 ................................ TTCGGGGGTGACAACCGGCGCGGTGAGGCCGGT 9606 32 100.0 34 ................................ TCTTGCGTGGTGGGCTGTTATCGGCATCTGATAG 9672 32 100.0 32 ................................ ACACCAACGACACAGGCAAAGGCTTCATCCTT 9736 32 100.0 34 ................................ TTCAATGAGCAGAATGCGGGCATTGCCGCTGTAA 9802 32 96.9 34 .......................G........ GCAGCGACCAATCACCAACCTGCACCCGCACCAG 9868 32 100.0 34 ................................ CAGGTTGGCGTGCAGAGGTCGGCAAGCAGCCGCT 9934 32 100.0 34 ................................ CTCGAAGACATCTACGGCAGCACCACCCGCCGCC 10000 32 100.0 35 ................................ TTGGTGTCGCGCAAATGGGCGATACCGTCGCGGAT 10067 32 100.0 35 ................................ CAGGCGACCACATCCTGACGCCCGAACTTCGATAC 10134 32 100.0 34 ................................ CCATCGCTATCTTATGCGAGGGCATGGCAATTTT 10200 32 100.0 34 ................................ GATGCGCCTGTAGGCCTCCATGTAGGTCATGGCA 10266 32 100.0 34 ................................ TCCTGCACATAGTGGCAATCCCGATTATACCGAG 10332 32 100.0 34 ................................ TACAGAAACATATATGCCGAAGATGGTCACGGAA 10398 32 93.8 33 .......T..............A......... CGCATGGCAGGTAGCGCATGAGAACCTGTTAAA 10463 32 100.0 35 ................................ AGCGCGCTGCAAAGCGTGCTGTCTGGCCATATATC 10530 32 100.0 33 ................................ TCCGGCGAGCAGACGATGGTGATCGAACTGGGC 10595 32 96.9 34 ....................T........... CCTACCCGTTTGCAAGCCGAAATCACCCGGCGCT 10661 32 100.0 34 ................................ AATTGAAAATTGTCCCACTAATACAAGAAGACGG 10727 32 100.0 34 ................................ CTTAAAGGGCTGGGCAATTTCCTCTTTGAGGAAA 10793 32 100.0 36 ................................ GTTGGGTGAACGGGTCTCGCTGTTACGCTTACGCAA 10861 32 100.0 34 ................................ CCCTTGCCGCACGCGGAAAACCTGCTCTCCGAAG 10927 32 100.0 33 ................................ TCGTCGATGTTGTATTCGCTGTGCCACTTGGGG 10992 32 100.0 35 ................................ TTCGCCACCCTCGGCGGTTATTTAGCGTCGCTTGT 11059 32 100.0 33 ................................ TCTGCTATTTTCTGTATGCCAAAATCGCAATAC 11124 31 84.4 0 ...........C.T.......-.T....T... | CTCG [11150] ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 34 GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : CGCAATATCCACCTTTCTTGATGCGATAATGTTGGTATTGATTACTTACGATATTTCCTTTTCAGATACAGCGGGTGCAAAACGTCTGAGACAAATAGCAGCGCATTGTCAAGATTATGGCGTGCGGGTGCAATATTCCATTTTTGAATGCGATGTGAATCCCGAACAATGGGTACGGCTAAAAGATAAATTATTACAAACCTACCAGCCGGAAACTGATAGCTTACGGTTCTATATGCTTGGCAGCAAGGGACGTAATAAAATTGAACATCATGGTGCCAAAGCAGCCCCAGATATATTTCGTGATGCATTGATTATCTAGCGCTAACCATTAGTTCTCATCGAAAGGCGGGAGTATTGGCGGCAGATATAGCGTGCTGAATAGAAATAGATTTAAACACATAGCATACGAATTGCATCTTACCCTACTGTACTTTGTCTGCTTAGCTAGCGAATAGTGCGCTTTCTATGCAGGCTGTACCTGCCATTGCATGATGGCA # Right flank : CCCAATAATTTTATTGTGTTCTCCCACTCAATATGAGCATCCTGTCCGCAAGCATTGTGGATAACTTGGTGCATAAACTGCGGGGTATTGTGAAATTCACAGCGCGTGCCACAGCCTGCACATGACGATGCAGCAATATTGGGAAAATAAATTTTATTGGAAAACAGGGTGTTAAGCAGAAAAACCTGTAAGAAAAGCATTTTTTTAGGTTGCAATTCGCCAAGGCGCGCCAGTATGCGATTTGTGCATAACTTTGCTGTTATCGCCATCCCCCGAATGCTTCATACGGCGCTGCGCCGCCTGACCGCCCCCATAAAAGAAAGTAGCGACATTTTTATGGACAACCCGCGCCGTACAACCGCGTGCTGTCTTAGGCAGCGCGCCTTGCCTGAGACTTTCGGTATATCGCTATAGTACGGGCACCCACCGCTGTCGTCGCTGGGTTTTCAGTTGTTATTTCAGTCGTATCCGGCAATGAAAATCTGTTTCTGCGGGAATTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 13775-14006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAQ01000033.1 Cardiobacterium hominis strain 599_SSED 533_23450_452231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 13775 31 100.0 35 ............................... GATGTGGTCTATGTCGATCAAGGCAAGCCGGTGCG 13841 31 100.0 36 ............................... TGCGCCTTGGAGCGGTTGGTCTTGTAGTCGTCCACG 13908 31 100.0 37 ............................... GCGGTGGTCATCCTCACCGATGACAACACGCACAGCG 13976 31 93.5 0 ..........C...................T | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 98.4 36 TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Left flank : AGGCATTGACCTCGCCCTGCGCGTCAGCCGCGCGCCGATACCGAGTCTTGTCGTCCGGCGGCTGTTTGAAGTGCGCTTCGCGCTGGTCGCCTCGCCCGCCTACATCCGCCGCCACGGCCTGCCACGAACGCTTGAGGACGCCGCCAGCCGCAGCGCCGTTCTCCCATCGTATGCCGACATCAGCCGCATGGACTGCCGCCGTGGCGACGAAAGCCACACCCTGCACCTGCACAGCGCCCTGCAAAGCAACAGCACCGTCATGCTGCACCAACTGCTGCTTGCGGGCAGCGGCATCGGCTACCTGCCGCTGTGGCTGGCGCAGGACGACCTCACCGCCGGGCGGCTGGTGCGCCTCCTGCCGGACTGGCAGTTACGTAGCATCACCCTGCACGCCGCCTACCCCGACCGCCGTCACCTCAGCGCGAAAATCCGCAGCTTCATTGATTTTCTGGTGGAGAAGGCGAAAACGGTAGAGGGCGATTGAAGTGACAGGGTGTTAT # Right flank : TTTACAAAACTCGCAGCGGTCGCCACGAGCGGAAAATCGCTCCCCACGCCCTAACCGTTCCCCATTTTTGGGCGCTCCGCGCCGTTCAAATGTGCACGGTCTTCGCTACGGAATGTTGTGTGTATAGCGGGCTGTTGTATGGAAATAAATGGGATGGCGATACCGCGCCAACCCGCAACACCGCTTTGGTGGGCGGTTTTTTTCACCGCACCGTTGCGGGTAAAGCAAAACCCGCCGGGTGGCGGGTTTTGGCGAGTGTGTTGTGTGTAGTTATTGGTTCGGTCGTGGCGCGGTGCTTTATTTTTCCAGCAGGGCGCGCAGCATCCACGCGGTTTTTTCGTGGGTTTGCATGCGGGTGGTGAGGAGGTCGGCAGTCGCTTCGTCGTTGGCTTCATCGACTGCCGGGAAGAAGGCGCGGCAGGTGCGCACTACGGTTTCTTGGCCGTCCACCAGTTCCTGGATCATGGTGAGGGCGTCGGTTTTGCCGTTGCATTCTTTGA # Questionable array : NO Score: 8.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCTCCCCATGCGGGAGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 57208-57807 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAQ01000087.1 Cardiobacterium hominis strain 599_SSED 1140_66793_1461537_173+,...,477+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 57208 36 100.0 33 .................................... TTTTTAATGGCGTAAATATGGCGTAGATTTTGG 57277 36 100.0 33 .................................... CCATGGGTTTTCTCCTGTTTTAGAAAAAGAAAA 57346 36 100.0 33 .................................... CAATAATCCCAAATTGTTGCGCTTGCGTCATTC 57415 36 94.4 34 ...A......T......................... TCGCATTCCTCGCGCTGCGCGATGCGTACACCTG 57485 36 100.0 34 .................................... TCCAAAACTTCTTCAAAATCACAACCTTCCATAA 57555 36 97.2 41 ...............................A.... CTCGCCGTCCCGACATGGGCGGCTTCTTGCTTGGATTTTGG 57632 36 91.7 34 ...AG...C........................... GGTTGTTGTACGCTCGGTTGTACTCCTTGCGATA 57702 36 97.2 34 ................................A... ACACATTACAAGCGCGCCTGCTGAAAAATGCTTA 57772 36 83.3 0 ...A....C...................T..T.C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 96.0 35 ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Left flank : GCCGCACTCACCGCCGCCTTGCTCAATGGCGCAGCGCTTGCCGACGCCGTACAAAGCGCGGGCGACTGGGTGGTTGCCGCCCTGCGCTACACCGCCGCAGAAAACAGCGGCGAACTGCGCTTCCCGCCGCAATAACTCGCCCCAAGAACCATAGAAAACAGAAACGGGAAAACCGCCGATAACCCCTCTCCCCTCTCTTGCTGCGCAAACCATACTTGCGCAGCAAGAGAGAAAAGGAGTGCGCGCTAAAACAGCACGTTTTACAGCTTGGCATCCTGAAATACCATAAATAACAACGTTGCAACCACATCCAAAACAAATGACAAACAGCGCTTAGCGATGCATACAAAAAACCAATACCCCTCAAAAAACTGCTAAAATACATCCCATGATAATCCCCAACAAAATCCGAATGATAAAGCCCAACTTTTTGCAGATTACAAAAGTTGGAAAACCCCCTTCTAATAACCTAAAAACAAAAAAGAAAAACACACCTCGCT # Right flank : TAAAAAATGCCGACATTCGTCGGCATTTTTTTCGGTGATGCGCGCGTTGGATGCGCGGCGGGGTTTCGCAGGCGGGTTCAGGTCATCTCCCTGCCGCTTCCGCCTGCGCTTCCAACGCGCTTTCTTTGACGATGCACATCGGTTTGCCGCTGACCGGGCAGGTGTACGGCGCGGCATTGACCGCGAAGACGTCGGCGAGCAGCGCCGGGGTCAGCACTTCCGCCGGACTGCCTTCGGCGACGAGTTGCCCCGCTTTCAGCACGATGAGGTGGTCGCAGTAGCGCGCCGCCTGGTTCAGGTCGTGCAGGACGGTGATGACGGTCGTCCCTTTTTCTTGTTGGACGCGCATCATGTCCATCAGCGCGATTTGGTGGTTGAGGTCGAGGTAGGTGGTCGGTTCGTCCAGAAGCAGGTACGGCGTTTCCTGCGCCAAGGTCATGGCGAGGAAGGCGCGCTGTTGTTGGCCGCCGGAGAGTTCGTCCACGCGCTTGTCGGCGAGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAAAACCGTCCCTGCTCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 1 43994-45695 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVAQ01000121.1 Cardiobacterium hominis strain 599_SSED 1176_46081_829252_693+,...,148+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 43994 36 100.0 33 .................................... ATGAAAGGGCGTAATGCCCTGATGTACCAGCTT 44063 36 100.0 35 .................................... TAACTCATGTTAGTGATGCCATATCCAAGACTTTC 44134 36 100.0 33 .................................... TTCTGCCACCTGATAAATGCTTTCGGCGGAAAT 44203 36 97.2 34 ...............A.................... GGGTAAGAATTCCGGACTTGAGTACTCATTGTTG 44273 36 100.0 32 .................................... ATACAGGTGATAGCTCGTTCTACTGAATAAGC 44341 36 100.0 34 .................................... TTACGTGATTCCCAGTTGTTATAGATTGCACTCG 44411 36 97.2 32 ..................C................. ATACGGCCGGTTGGTGTGGATTTAGATAGGGA 44479 36 100.0 33 .................................... TTGTTGGCTTCATCATAAAAATCCAACAATTGC 44548 36 100.0 33 .................................... CTCTTTTCTCTTTTTCTTTCTCTTCCTTGTACC 44617 36 100.0 33 .................................... ATTAATAGCAGCCTGACCAATAGAAATCTTCAT 44686 36 100.0 34 .................................... CTACAAACACCGGGCGGGGTGTATTCTCGAAATC 44756 36 100.0 33 .................................... CAACTTGCAGTTGGTTTTGATTGCTCATGAAAT 44825 36 97.2 34 .........T.......................... GCGGCTTTGTGATTATTCAAGCACAAGCAATGCT 44895 36 100.0 33 .................................... TGTAGTAGCCGTGGCGGGAACGCATCACTATCA 44964 36 100.0 33 .................................... TACCACCCTTTATGTTCTCAGTCCTTAAACTCC 45033 36 100.0 32 .................................... GTCGGCGAAGACGGTGTACGTCAGCTCATAAT 45101 36 100.0 36 .................................... TTCCGCAGCCTTTTTGTTCGGGTCAAATGCGCTTGC 45173 36 100.0 34 .................................... TGGGGAAATTGATAATCCAGCGTGGACCATACAG 45243 36 100.0 34 .................................... CGCCATAGATTGCTGCGTATCTTTAATAGGATCA 45313 36 100.0 33 .................................... ACGCCGCGACTGCCGTAGTATTCGCCGTGGATG 45382 36 100.0 32 .................................... CTGCATCGGCGGTGAAATCAAAATATTGTTGA 45450 36 100.0 34 .................................... ATTTGGTTTGCGAGAATTATGATTTTTCCCATGA 45520 36 97.2 33 .................A.................. AGCGACGCCGCTCAACATTGCCTGTTCACACAT 45589 36 100.0 35 .................................... CTATCTATTTAAAAAATATAAATACCGTCTGTTTG 45660 36 77.8 0 ...G....AA.T...................TTTT. | ========== ====== ====== ====== ==================================== ==================================== ================== 25 36 98.7 33 ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Left flank : AGAAAAAACCATGCCCGACTACCTTATCGCCTACGACATAGCAGCGCCCAAGCGCCTACAAAAAATCCACAAATGCCTCTGCGAAGAAGCCATCCCGCTACAAAACAGCACCTTCCTCTACCGCGCCAGCCCCGGCCAATTCGAACACCTCTGGCAAGAACTCGCCCTGATGAGCAAAAACGAAGACGACCTGCGAGCCTACCGCCTCCCCGCCGCCAGCCTCTGCTACGAATACCACCCCAAAACCCCGGAAGGCATCTACTGCCTGTAGCCCATTTCCAAAACCACCCGCAAAAAAAACAAAAAAAACGTGCCAGCATAGAAAAAACCAACCAAATACAATAAAATACGCGCGCTATCAGCGAAGCAACGCCACCCCAAACACCCCATGAAAAACCCTAATAAAAACAACGGCCGAAGCGCCAACTTTTTCACAAAAACAAAAGTTGGAAACGCCCTCTGCAACACATTGAAAACAAGGAGAAAAAGCACCCCTGACT # Right flank : CTTAATCTGCCCGCTTTTGCGGGCTTTTTTATATGACAAATTTGTCGTTGCAGACTGGCTATAGCAGGTGCGTTATTCTTGTATGTTTGTTAAAACACTGTTTAGACATCTTTAAGCAGTGCGTCATAAAATTGTCAAAACAGATAGATTTTTCTTTCTGGCGTAATGTGCCTGCATCGCAACAAGATGATGCAATGATAAGAGCGATGCCTGCTTCCAGTGTAAAGAACCGCCCAGACGTACCGAGTATCTTTTTTGCGCCCGCTGTCCAGAATTCCACCAAACAGCAATGGGTGCTTGTTTGTTTTACTGATACTGGCTGCACTTATAGCGATACACCGAAAGCCTCAGACAAGGCGCGTCGCTGAAGACAGTACGCGGTTGTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAAACCTGTCCCTGACCCAAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //