Array 1 110-3062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZY01000111.1 [Clostridium] symbiosum strain 2789STDY5834864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================= ================== 110 32 100.0 37 ................................ TGTAATCTTTTATCTCGCACAGTGACGGAAGAATCGG 179 32 100.0 36 ................................ TTGTAGTGTCATGATTCAGCAACAAATCCACATCAG 247 32 100.0 35 ................................ TGCGGGTCTATATCCACCATCAGCCAGTCATAACG 314 32 100.0 35 ................................ CCATGCATCACCCAGTTTCAGGCGTAATTTGACTG 381 32 100.0 36 ................................ TCTGGCAAGGTCAGTCCATTTGATTCCGCGGGCATG 449 32 100.0 35 ................................ TGTTTGTATCCACGAAGAAACCTTATAATCGGTTG 516 32 100.0 35 ................................ AGCTTTCCGGCATTGGTTTTTAATTCCACAAATAG 583 32 100.0 35 ................................ GATCCATCCAACCACGCCAATTGCGTGCTGGGTGG 650 32 100.0 35 ................................ ATCCGGATGCCCTTTCGCATGGCTGTTGATCCATG 717 32 100.0 39 ................................ TGCGTGTCTGGCTGACGGGTATCTTTCGGGCCACACAGG 788 32 100.0 36 ................................ CGGTGCTGCGGAGGCAGAAAACAGGGGTGGAAGCAG 856 32 100.0 34 ................................ CCTCATAGCCGTTATTTGCCGCAGACTTATAAAG 922 32 100.0 34 ................................ CGCCATAGGCCCCTGGTATCTCCACTGTCCAATG 988 32 100.0 35 ................................ ATTCAGTGTACTTCTTGATATTCCAACGTTTTTTG 1055 32 100.0 35 ................................ AACCAGTCTGCCGTGTACAGCGGGATGTATGGCCG 1122 32 100.0 34 ................................ CGTTCCATCTGAATAATGCACTGTAAATTTTTCG 1188 32 100.0 81 ................................ ATACGGTAATGAAATCATTAAATGTGATGAGCCTGTGGATCGAAACCGCTGCTTCCGCCCATGTGACGAAAATACTGTATG 1301 32 100.0 36 ................................ CAGGAAGTTAGATGCAGTAATAACATCGGTGTTAAG 1369 32 100.0 35 ................................ ATGCACAATTCACAGGTGGAAGAGGAAAAGAAGAG 1436 32 100.0 35 ................................ TAGTTGTCCGGTTCCGGCCAGATAGCCTAACCAAG 1503 32 100.0 33 ................................ TGCCATCACAATCGGAATGTCTTTTCCCAGTTG 1568 32 100.0 35 ................................ AGCCGTCTTCGGCCGGAGGGCAGCCGGCGCCACCG 1635 32 100.0 36 ................................ AAACTTCGGCAGCCACTGCTTAACAGGGAGTTCTCG 1703 32 100.0 35 ................................ TGATTATAACAGAGAAAACAGGAGGATGCAAGGAG 1770 32 100.0 35 ................................ TACCATCCACTTCGATTTTATTGATAGATGAGCGG 1837 32 100.0 35 ................................ AAATGCAGTGTATCAGGATGATTAACCTTGTGCAG 1904 32 100.0 35 ................................ CCAATTTTTAATTTTTTTTAATGGGACATTGTAGG 1971 32 100.0 36 ................................ AAAATCATTCATATCAGCCAGGACGATTCCGGAATG 2039 32 100.0 35 ................................ TGATTTTATCTTTGCTGTTATCAAACATCATATTG 2106 32 100.0 34 ................................ AATTCTAAATTGGGGCGGAAAGAGAGGGTATATG 2172 32 100.0 33 ................................ ATTAAAAGCATTCATTTCTGACTGGGTAAATGC 2237 32 100.0 32 ................................ CTTCCTTAGTTCCCTTAGCAAAGAAAACATAA 2301 32 100.0 34 ................................ ATACATGAAGAATAATATCGAATTTGAAGAATAT 2367 32 100.0 36 ................................ TGTCAGAGTTGCAATACGGCTGTATACCCAGTCAAT 2435 32 100.0 34 ................................ TATGACATGTGGAGTGACTGGATATCCAGAACGT 2501 32 100.0 35 ................................ GGGGAAACGATATCGGTATTTTATAAGGGCGTACA 2568 32 100.0 34 ................................ TTCTTGTATAGTCATCCAACGTTTTCTGATCCGC 2634 32 100.0 34 ................................ CTTCACCCACAACAGCTTCTTCCATAAGTGGAAG 2700 32 100.0 34 ................................ TTGTCAAAATTGAAGGAGGAAGGCAACATATTTT 2766 32 100.0 33 ................................ CCAGATCGTTGGCACAGCCTTTGTTTTGTTATA 2831 32 96.9 36 .........................G...... CTATCTGTCCACCAGTGTTGTCCCGCAGCCCGGGAA 2899 32 100.0 34 ................................ GTCCACCGTCGTTTCCATGGGCGCATCGATAATG 2965 32 100.0 34 ................................ AAACCGAAGTGCTGGTAAGACTACTTTTTTCAAT 3031 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ================================================================================= ================== 44 32 99.6 36 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GTCGTCATACCAATGCCTAATCATTATACAGCTTAAACAATGAGAGGATTAAGTCCCAACTGGCTGTTGGGTACTGAAACCCTACACTTATATATTAGGAGCGAGGTGGG # Right flank : TTTTATTGGCGCAAAGAGATGTGGATTCCAGTGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGTCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGTGAAGTGTATAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55130-55904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZY01000005.1 [Clostridium] symbiosum strain 2789STDY5834864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 55130 33 100.0 35 ................................. TTACATCAACGGGTTACGTTCGCCGAGATGCGAAA 55198 33 100.0 34 ................................. CACTGCCAGATTAAGTTCATATCCTTTTTCGGCG 55265 33 100.0 34 ................................. TTTTGTCCAGGTATCGTCTGCCGTGGAGATTCCG 55332 33 100.0 36 ................................. GATGATGGACAGTAATTCATTCAGGAGATACCAAAC 55401 33 100.0 34 ................................. TTTTAGTACGATATCGCTTTACGTGCGTCTCATA 55468 33 100.0 34 ................................. CGTACACCCAGACGGTAAGTGTGCCAGGAGCTAC 55535 33 100.0 34 ................................. TACCTTGTAGCTGGCGCAGACGCTTCTCCAGCCG 55602 33 100.0 35 ................................. AACCGCTTTTTTATAAGCAGAAGAGGGGGCTTGCC 55670 33 100.0 34 ................................. GTGTATATTCTTCATAGCCTTTTAGCATATCATC 55737 33 100.0 35 ................................. CCGGCTGATATTCGATATCCAGAGGCAGCAGGATA 55805 33 100.0 34 ................................. TGGTTTTTATTTGAACAGCACCAGCATGAAACGC 55872 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 100.0 35 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGATAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATCGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATACAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 56652-58154 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZY01000005.1 [Clostridium] symbiosum strain 2789STDY5834864, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 56652 31 100.0 34 ............................... ATGCCCGGTTCGTTGGAACCGAGTGGGAAAAGAG 56717 31 100.0 38 ............................... ATCTCCCAGGCATCCACTCTGTACCCGACCGACACACC 56786 31 100.0 35 ............................... ATCCAGCCCTTGCATGGAAGCGCTTAAATCATTTC 56852 31 100.0 37 ............................... ATACCGTGAGTAATGATTAAAGAAAGCAGGAAATTAT 56920 31 100.0 36 ............................... ATCACTACAATTACTTGGTATTCAGCAACAGTTACC 56987 31 100.0 36 ............................... ATCTCTTTCATTTTCAAAGCTATTGGCTATTATTAA 57054 31 100.0 36 ............................... ATTGCTGTTCTGCCGCATCAGCCACCGTTTTGTTTC 57121 31 100.0 37 ............................... ATAGTTTCCGGTGAATATTTTCCATCCTGTCCACGTA 57189 31 100.0 35 ............................... ATTGACACTTGATTTTGTTTTTGCCATAACTTTTC 57255 31 100.0 36 ............................... ATCCAGAATCGCCAGGATGGACGGGATGTACTCGTT 57322 31 100.0 36 ............................... ATTTCATCAGTATGATATAACACGCCATCCACTTCC 57389 31 100.0 36 ............................... ATTATTTGGAGGGAATCCACCTGGTCATCTATCCAC 57456 31 100.0 35 ............................... ATTTCTTAGGTCCTGCAGCTTAACGCTTTCCAGCG 57522 31 100.0 37 ............................... ATACCATCCCGCGTCTTCTGTACCGGTCCTAATCCGC 57590 31 100.0 35 ............................... ATCCCCATCCAGCCCAGGTGGAACCGTATTTATGA 57656 31 100.0 36 ............................... ATTCTGACTTTCTTGTCTTCAGTCCTGTTTTTAGTC 57723 31 100.0 36 ............................... ATATTACTGTTTGGGTTAAGTTCTCCGCCTCTTCTC 57790 31 100.0 37 ............................... ATTTCACATACTCCACAGCCGCTTTTTGGAGGATGGC 57858 31 100.0 35 ............................... ATGGAACATGTTCCATACATTCTTCCCATATTGCT 57924 31 100.0 36 ............................... ATCCTGCTGTCCCTGCACCTCAATCATTGTCTGCAT 57991 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 58058 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 58124 31 90.3 0 ..........T................TT.. | ========== ====== ====== ====== =============================== ====================================== ================== 23 31 99.3 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : AGTTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAGGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5658-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYZY01000051.1 [Clostridium] symbiosum strain 2789STDY5834864, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 5657 32 100.0 35 ................................ GTTCGATGGCAACAGAAAAACAGGATATGTGACAG 5590 32 100.0 36 ................................ CGTTTGACAATTTAATTCAGCTACAGGGAGGGAAAG 5522 32 100.0 34 ................................ AATTTATCAGGCCAATGCAATTGAACAGATAATG 5456 32 100.0 35 ................................ ATGAAACAATCAACAGAAACAGAGAATTGGACGGG 5389 32 100.0 34 ................................ TAAATGAATCTTCCATGGAAGTTCTACAGCTACG 5323 32 100.0 35 ................................ TTGCTTCACAAAGCGGTCTACCCAACTTCTCGTTG 5256 32 100.0 34 ................................ TACATCAACGGGTTACGTTCGCCGAGATGCGAAG 5190 32 100.0 34 ................................ ATCGGATAGGCGCCTGTAGGATAATAATCTGCAG 5124 32 100.0 35 ................................ TAGGAAACCACAATGCGCTAACAACATATTGATAG 5057 32 100.0 33 ................................ TTCTAATTTTAATGGCATTACCAGATATGATAG 4992 32 100.0 34 ................................ TGATTCATGAACGACCAACGCCCAATCATAAATG 4926 32 100.0 35 ................................ GGAATATATCAGGAGAAAATTGGGGATTAAATGAG 4859 32 100.0 35 ................................ TGACAAAGGCTGGAATATTGGATGCGCAAAGATAG 4792 32 100.0 35 ................................ CATCGAATTAGGAACCATAGACAATTTCAAGGAAG 4725 32 100.0 35 ................................ TTGCCAACGCATTATATCGAAATCATGGTTGAAAG 4658 32 100.0 35 ................................ GCTGCTACAAGGATATTGTTGATTACCATGCTTGG 4591 32 100.0 35 ................................ GCCTTGGCAAGGCATTTCTATTTTTGTCTATAACG 4524 32 100.0 35 ................................ TTCTTTTTTCAGCTTATTGACCGCTCGGGTCAGCG 4457 32 100.0 37 ................................ AAAGCTTTTGTTTAGGGCATTTCGACAGTTTGAGATG 4388 32 100.0 36 ................................ TTAAAACTGCTTGACTCATCCACCACCACCATGTCG 4320 32 100.0 36 ................................ GCAAATAAATTATATCATCCTCGGAGCGTCCTGGCG 4252 32 100.0 34 ................................ TTCTGCTTATAAAAAAGCGGTTGAGGGGCTTTTG 4186 32 100.0 35 ................................ AATGGTCTTAACTTTGCTGGCCGTCACCTCTGTCG 4119 32 100.0 37 ................................ CCTTCGTGCAGATGGAAACATAGTGACGGGAGAACTG 4050 32 100.0 35 ................................ CATTTTTCCTCCATCAAATTTTCAATATTTTCACG 3983 32 100.0 34 ................................ ATAGCCTGCGTCCTAAAACGGATGTGGAACGGCG 3917 32 100.0 36 ................................ ACGTCAATGACGAATTATTGCAATCATTAAACAAGG 3849 32 100.0 34 ................................ CTAATAAAATGGCGAGATGGTCAACGGCAAACTG 3783 32 100.0 37 ................................ CGGTACTGACGGAAAAAGTCGGCAAGGCAGGAAGTTG 3714 32 100.0 35 ................................ ATAGAAAAAGCCATGCTTTTTCAGCACAGCTTCCG 3647 32 100.0 34 ................................ ATTCAAGAAAATCATTGCCTATGACCGTATGAAG 3581 32 100.0 35 ................................ CCACCAACGAAGGCTGACCGTATGGCAGCAGAAGG 3514 32 100.0 35 ................................ TGTTCCGGAGATAATCCCGGAGGGCAGTCGAGATG 3447 32 100.0 34 ................................ CGTCTCCTGGCCGCCAAGTTTCAGTGCGGCCAGG 3381 32 100.0 35 ................................ CATTTTTCCTCCATCAAATTTTCAATATTTTCACG 3314 32 100.0 35 ................................ CCTTGAGACATCCAGGCCACGCCGGCCGGTATTTG 3247 32 100.0 36 ................................ CACCACACTGGTCTTAAGTTCATCCAGCGTTTGACG 3179 32 100.0 36 ................................ CATGTCGTGAAAACGGTTGATATAGCGGGCCGTAGG 3111 32 100.0 36 ................................ ATATTTTTTCACACCACAGGCAATAAGTGACGCCCG 3043 32 100.0 37 ................................ AGAAGTTAAGAAAACAGTAAAAATGACCAGCAGCTCG 2974 32 100.0 37 ................................ CCGGCTCCGGCGTTTTGCTCCACCGGCCGGCTGCCTG 2905 32 100.0 35 ................................ TTATTTTTAACCCGTAAAATCTTCCCATTATGACG 2838 32 100.0 34 ................................ TGGCAACTTTCTAATTCAGTTGTTTTTTGATGGG 2772 32 100.0 34 ................................ ATTATTCCTATCGGGTTTTCTATTGCTACTTTAG 2706 32 100.0 35 ................................ TGTTTCCAGTTATATTTCCAGTTTACATCATCAAG 2639 32 100.0 31 ................................ ATCAAGTTCTTTCATTGTTTGGCAATTACTG 2576 32 100.0 35 ................................ AGCTAGTTCACAACAACACATCTGTACTTCTTCCG 2509 32 100.0 35 ................................ AAGCCCAAAGCCATTGGCATCACCAATGTTAAGCG 2442 32 100.0 35 ................................ ATCAAGAAAATCACGATTAAAAGATTCAAGTACAG 2375 32 100.0 35 ................................ TTCCACCAGCTATTGATGATAGCCGGATCGGTGCG 2308 32 100.0 38 ................................ AACTGCTGCCAGGTCGCCAGCATGGCAGCGCGGTCAAG 2238 32 100.0 36 ................................ CGATTGACCTGACATATGTAAATAAATTAGTGATTG 2170 32 100.0 35 ................................ AGTTTTGCTGGCAAGCATGCCCGTGATGTAGTCTG 2103 32 100.0 38 ................................ AGTGCTTTTAAGCGGTGGCACTTTATGTGCCTGGCTTG 2033 32 100.0 35 ................................ AGGAGTTTCCGGTGAATATTTTCCATCCTGTCCAG 1966 32 100.0 35 ................................ ATTCATGACCTTGTTTGCGACAGCATCAATCAGGG 1899 32 100.0 35 ................................ CGCCCCTTCAGCAGCATAATCAACGCTGTCCTGGG 1832 32 100.0 36 ................................ CATAATCTGCCGCCACCAGCTCCTTTGTCTGTATCG 1764 32 100.0 35 ................................ GTCTTCCACTTCAACAAAATAACTGTTTCTGCGCG 1697 32 100.0 35 ................................ ATGCTCCCCCAGCTCCAAGCGTTGCAGATGCGGCG 1630 32 100.0 35 ................................ AAAAATTTCACCTTCTTTCATGTATTAAAAAAGCG 1563 32 100.0 35 ................................ ATCTGCAATTCCGGATGTCCCGTCTGAATTCTGGG 1496 32 100.0 36 ................................ ATCCATTTCCTTTACTTCCCGGTTACGCCAGTCATG 1428 32 100.0 38 ................................ GGCGATAAGAAGACGGGCTTTGACGAAGCGACGGTAAG 1358 32 100.0 36 ................................ AGGAGAGGAATCTCCCGCTTTAGGCGCCGGTAATCG 1290 32 100.0 36 ................................ TTTAATTCCACGGCAGCCCACAGTCATCATCCGGCG 1222 32 100.0 36 ................................ ACGCCGATTCCGGTTCGCACAAGTTCGTTTAGCAGG 1154 32 100.0 33 ................................ GCCCCATCAGCCAGCGCACTAACCAGTATCGCG 1089 32 100.0 35 ................................ CAATCGGGTACTTTAATGTCGGAGGGAGCGGGGTG 1022 32 100.0 35 ................................ TGCCAGAAAAACAAAATTTCCTCCTGATTCCAACG 955 32 100.0 34 ................................ TTGCGGAACGACCGAATATATCCATTGCCATGCG 889 32 100.0 35 ................................ ATGCACAATTCACAGGTGGAAGAGGAAAAGAAGAG 822 32 100.0 37 ................................ CGGTACTGACGGAAAAAGTCGGCAAGGCAGGAAGCTG 753 32 100.0 36 ................................ AGCAAAACGATCTGCCGCGTTTTGAATAACCGGAAG 685 32 100.0 35 ................................ CGCGTTATCCACATAGATAACGCCGCCATTGACCG 618 32 100.0 35 ................................ GAACAACAAAGGATGGGAGGGTGCTTGAATGAATG 551 32 100.0 36 ................................ CTTTCTTTCGTATTTCAGCACGTCACTGCTGATAGG 483 32 100.0 34 ................................ CTGTAAGTTCATTTCAATCTGTCCGCCATCACTG 417 32 100.0 35 ................................ TGTATGTAATATTCAAATACATTTCTTCTCCTCCG 350 32 100.0 35 ................................ TTGACTGGGGTGAGCGTAACGGGTGAGGAGAGTCG 283 32 100.0 35 ................................ TGGCGGGTGTAGGTGGCATAGGCGGCCGCTTTTTG 216 32 100.0 35 ................................ CCGCCTGGCTGGGAATCGTGCCAGTGATTTTACTG 149 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 83 32 100.0 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : AAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCTG # Right flank : CATAATGATGTTGTAAGCAACAAGAAAGCCTGCTAATAAAAAGTCAAGCACTTTTTGAAAATTTTTGTGAAGTGATTTTATGGCACAACTCTAAGACCGCCTCATCAGCCGGTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //