Array 1 126229-126021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQP01000074.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 126228 28 96.4 32 A........................... TCACTAGCACGTCGGGCAGGTCCTAGACAGTA 126168 28 100.0 32 ............................ ACTCCCCGCAGGACGCGGCGTGCGAAGGGTTA 126108 28 100.0 32 ............................ AGCAGAAAGAACGCACCGAGTGGCATCGCGTG 126048 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAGTCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAGCACCAAGGCGGCAGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGTGAGGATTCTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTA # Right flank : ACGAAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATTACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTGGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25669-26056 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQP01000082.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25669 28 100.0 32 ............................ TGGGAGACTGCTGTACATCCCTTCAAACGCCG 25729 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCTTG 25789 28 100.0 32 ............................ CGAGTGGTGGCGTTGCGAGGGCGGCCCACGTC 25849 28 100.0 32 ............................ AGGAAGTCGGGGAATTTCGCCCAGCTGTCGAT 25909 28 100.0 32 ............................ CCGGAGGGGTGGGGGTGCTGTAACACCCCCAC 25969 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 26029 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACTTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGGGCCTCCGGGAGCAACGATGCAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAACTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCTTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38896-39643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQP01000085.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38896 28 100.0 32 ............................ AGTACCCGTTCTCGCCGGCCTTCGCTTCGGAC 38956 28 100.0 32 ............................ AAGTAGATCAGTCGATTGGCGAAATCCACTCT 39016 28 100.0 32 ............................ AGGGCGTGGCCAAGACCAAGGGCCACAAAGCC 39076 28 100.0 32 ............................ CGTAAAGAGTGCCCCCGGCTGGCCGCCGCTTG 39136 28 100.0 32 ............................ GTCGGCAGCGATCTTCGCCTGAAGGTCAGCGG 39196 28 100.0 32 ............................ GCGACGTTGGCCAGCGCGAAGGACCACACCAA 39256 28 100.0 32 ............................ ACCGACGCTCCGGCCTCGGCCTGGGTGGCGGG 39316 28 100.0 32 ............................ GTCCGTGGCCCATATGGGCACCTCTACCGCCG 39376 28 100.0 32 ............................ CTCGGTCGGTGCGGTTGCTGTTCTGGATCGTC 39436 28 100.0 32 ............................ ATCCAGATGGCGCGCTTCCATGCCTTCACAAC 39496 28 100.0 32 ............................ TGGCTTTCCTGGAAGACATTCTTCAGTTAATC 39556 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 39616 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGGCATGCCGTTGAGGCGCTGACGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49350-48183 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLQP01000085.1 Pseudomonas aeruginosa strain WH-SGI-V-07618 WH-SGI-V-07618_contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49349 28 100.0 32 ............................ ATGCAGCCACCCCCGCATTGGGACGTATCACT 49289 28 100.0 32 ............................ TTCACGGCTCAGGAACTCCTGTTTCAGCTCCT 49229 28 100.0 32 ............................ TCTGAGGTCGCTATGCGCGTGTTAACTTTGTT 49169 28 100.0 32 ............................ TTCAAGTGGAGTCACGCATCTCGAGGACTGCG 49109 28 100.0 32 ............................ ACGAACTTGATGGTCAGGGCGCCGCGCGGGTC 49049 28 100.0 32 ............................ TGGCCGCCCCGCCTGGCCGGCGCCGGCATCAA 48989 28 100.0 32 ............................ GCTGGCGCTTTGTTTCCGTGCCGTCGTTATAC 48929 28 100.0 32 ............................ GAAGCCCAGGTCCTCGGCGGCCACACCGCTGT 48869 28 100.0 32 ............................ GCAAGACGCTGGGCAATGGGTACATCGTGCAT 48809 28 100.0 32 ............................ AGCACCAGCTTGCCGTTCGCCGGCTTCACCAC 48749 28 100.0 32 ............................ AGGAACTTGGCGACCGCAGCGGATCGGCTCAT 48689 28 100.0 32 ............................ TGAAAGAAGCGCTTGGGCTCAAGAATCCTGTC 48629 28 100.0 32 ............................ AAACGACGCGCCCTAGCACGAGAGCGCTTAAG 48569 28 100.0 32 ............................ GTCGAGCGGGCGGTCGAGCGGCTGCGCAGCAA 48509 28 100.0 32 ............................ GGAATGCAGTTGCCCGAGCGGCGGCGCCTCCC 48449 28 100.0 32 ............................ TGGAAATCCTCCGCCTCCGGCGCCACCACAAT 48389 28 100.0 32 ............................ ATCGAGCGGACATATCTAGAGGCAGTGAAGAG 48329 28 100.0 32 ............................ ATAGACTTGCCGATCTCGGCGGCTGCGCGGAC 48269 28 100.0 32 ............................ CGTTGATCTAATGCGGATGCGGGTGGAAACAG 48209 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.9 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGGTCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //