Array 1 299610-300036 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFN01000001.1 Candidatus Brocadia sinica JPN1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 299610 37 100.0 37 ..................................... CCAATAATAATTTAGATAATCTCTGTTTAATGGATAT 299684 37 100.0 36 ..................................... AACATAACCCTGAATTTACTATGATGGAGTTGTATC 299757 37 100.0 42 ..................................... GCGGTACAATTTTCTCGCACATAAAGCCCCGCTCGGTGAGTT 299836 37 100.0 45 ..................................... CAAGCTGATTCGGGTCAACTCGGGAGATAGCGGTTTTTTTGTTAA 299918 37 100.0 44 ..................................... TTCTACTGCGGCGCCAACGGTAATTGCTAATGCTGCTGCAACAC 299999 37 94.6 0 .................................TC.. | A [300032] ========== ====== ====== ====== ===================================== ============================================= ================== 6 37 99.1 41 GTGTGAATCATTGACCTGATGAATAAGGGATTGCGAC # Left flank : TGCAGGAGGTATGATATGCTGTATGTCGTATCTTATGATATACCGGACACCGGCAGGAGGACAAAATTGGCAAAGGCGCTTAAGGATTTTGGGGATCGGGTACACTATAGCGTCTTTGAGTGTATGCTGGACAGCATTCTCTTGAATAAAATGGTGGCTAGGGTAAAGAAGATTGTCTTGCCCAATGACGACAGCGTGAGGATATATGCCATCTGCGCCAATTGCGAACGGGCTATTCAAGTGATCGGGCAGGGGAAGGTAACCAAAATGGAGGACATTTACATAGTGTGAAGTACCCCAATGGGTTAACGAAACTCAAAAATCTTCTAAAAAGAGGGGGTGGTTACAGAAAAAATTGTAAAGAATGTACTTATTGATAGTTAGAATAAATTTTTTACCAACTTTTAAGGAGGTAATAGGAAAAAAATGACGCTCAAAAAAGGAGGTTACAGAAAATGCCCTTGTAAGTATTTGTGTTTATTATGGTTGGAATGGGCGGT # Right flank : CAGGGAGCAGTGACCAGTGACCAGATGACAGGGAAAAAAAGCTAATCTACTAGCTGATATCTGGCAACTGGAAACTGGTTACCGAGAACGGCTTGATGAATAAGGGATTGATCACAGTGGCCAGTGGTCAGAGGCCAGATGATAGTTGGAATTTAGATAATTGGTTTTCTGAAATCTGGAACCTGGCAACTGGCACCTGCGAATGGCCTGATGAGACAGTGACCAGGGGCCAGAGACCAGTGGCCAGATGTCAGGGGAATGATAAGGGATTGAAACGAGACGGGAAGAAGGATGAGGGAACGCGGGCAGAGAGACGAAGGGACGAGGGAGGTAAAATCGTGAGAGACGTGTCCGTGAAAAGATACAAAATTATCTCGTACACGGACAACAATCACGATTCAAAATAAACCTGCAGGACATCGTGGTTATGAAGCATAGCATTGGAAAGACAAAAGGAGTTGTATCAATGGTTGTTGTCTCAGATGAAGTACTAGAAATAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCATTGACCTGATGAATAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 359888-351147 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFN01000001.1 Candidatus Brocadia sinica JPN1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 359887 29 100.0 36 ............................. ATTTTTAAGACGTCCTAAGATACGATCCCTTAACTC 359822 29 100.0 36 ............................. ATGCAAAAAATTTTAGAAAAAATTCCACCACATGAT 359757 29 100.0 37 ............................. ACATCAGAGCCGGTTACAGCGGCAGAAGCAAAGATAC 359691 29 100.0 35 ............................. GTCTCCCCTGACAATCAACGATATAGGCGAGATAG 359627 29 100.0 35 ............................. AACAAACTTAAAAAACCATGTGCTATTAGATCGTG 359563 29 100.0 37 ............................. ATACAGACACCTACTGGGTGACCTTCACCCTGGGCAT 359497 29 100.0 35 ............................. ATGCGATTGTAAGTGCTTATCGTATTGTGCATGGG 359433 29 100.0 34 ............................. GCTCGTGACTTAAGGCTTTTCCATCAGAGTCGGG 359370 29 100.0 36 ............................. AGAAATATCTGTGTTCAGCCGGGTCAAAGCGAAAAT 359305 29 100.0 36 ............................. TCCTATCAGGCCGATATTTTTGACAAGCGGCATAAA 359240 29 100.0 35 ............................. TAGCTGTCTTAAGACCCTTCGTAAACTTCTCTGTA 359176 29 100.0 36 ............................. ATGTGCCAGACGTAGTACATTTATAACGATGCTTAT 359111 29 100.0 36 ............................. ATTGCTCCGTTCATAATAGCGCCACCTGCAATTCAC 359046 29 100.0 34 ............................. TAAACACACGCTTACCATCAAGCGATCTTGCCTC 358983 29 100.0 35 ............................. TTTTTCTGGGCACCAAAAACGTGCTAAAATATCTA 358919 29 100.0 35 ............................. GTATCTGCTGTATCTCCGCCACCAGCTTTGTTATT 358855 29 100.0 36 ............................. GAACAAAACACCTCAACCATTCCATTTGCACCTAAA 358790 29 100.0 36 ............................. GAATGGTTAAGGCTGAGATTGTAATTAACATGCTAA 358725 29 100.0 37 ............................. ATACCTTCTACCCACACCCTGCTACCGAGCGGGATTA 358659 29 100.0 35 ............................. ATAACTGGTAGCCTGATCATTTACAAAAACTCCCC 358595 29 100.0 36 ............................. TTTTATCCCCGCCTCAATAGCTGACGGTGTTGTTAA 358530 29 100.0 34 ............................. TATCTTCCGGATCGCCATCCTCACCCAGCACATT 358467 29 100.0 36 ............................. AATATTCATAACGTTTGATATAAAACCCGTTTTCGT 358402 29 100.0 34 ............................. GTGATTGGGGAAGAAATAAAAAGGGCGATAAGGG 358339 29 100.0 35 ............................. AGCGTTTCCGCGACCTGCTTCCAGGTTAAATTATA 358275 29 100.0 36 ............................. ATGATTTTCTCCGCAGGGGTCACACGCCCATGCGGA 358210 29 100.0 34 ............................. TGATGCTAAAACACTCATGCCCACCGCAGAAAGG 358147 29 100.0 36 ............................. TTTGTCAGGACTCTCGTGAGCGACTATATTGCAGCC 358082 29 100.0 34 ............................. GTACAAACTTTTTTATAATCTCAACGTACGCATC 358019 29 100.0 34 ............................. CGTTTACTAATCTCTTTCTCTTTTTTTCCTTCAT 357956 29 100.0 37 ............................. GGGCATCATCCCGGTATAAGGGGTAGTAATACCACCC 357890 29 100.0 35 ............................. TTGCGCTCGTCTTGGCCGCATACATATGCGCAGCA 357826 29 100.0 36 ............................. GAGCCTACGGCACCATAGGCTCCGCATGGGCGTGTG 357761 29 100.0 34 ............................. CCTCGAAGGTGGTAAAGAAGGTGGTAAAGACCAC 357698 29 100.0 35 ............................. GCTTACCCGACAACAACGTTGTTATATCATTAGTT 357634 29 100.0 36 ............................. TTACGGATGGAACCGTGATCTGGACAAAGATCGGCA 357569 29 100.0 36 ............................. TGATTTCGGCTATAATTCCCCACCCAGGTGGGGAAT 357504 29 100.0 36 ............................. CGGGAATAATCAAGGGGATTATTACATCACCGCTTC 357439 29 100.0 36 ............................. GTAAATAGAAATAGATTGATTAAAAACTCCCCCGTC 357374 29 100.0 36 ............................. TTTTTATGCGGTGTTCGAGGTATTTTGTGTCATATT 357309 29 100.0 34 ............................. AATTAATATTAAGTCTTTGTGAATTCATTAATTA 357246 29 100.0 37 ............................. CATAAATTTTATATGTGGATGAGGGGGGGTTGTTGTT 357180 29 100.0 36 ............................. GTGATTTTCTCCGCAGGGGTCACACGCCCATGCGGA 357115 29 100.0 35 ............................. GGACGTGTCCGGGATATGCGCGGTGATGGTTTGAT 357051 29 100.0 36 ............................. GTGGATGTAGAACGAGTAGTTGTGACCAAAGAAGGC 356986 29 100.0 37 ............................. AATTTCCACGTCCTTTGGTGCGTCTTCATCATTCGGG 356920 29 100.0 36 ............................. GAAGAAAATCCTTAAAGCAAGAAGCCCCGGTCGTTA 356855 29 100.0 36 ............................. CGCTTCGAGCGCGGACGGTATTGTTAACAAACAATC 356790 29 100.0 36 ............................. CTTACAAAGTATATCGTTTTACACATTAGTTTATAT 356725 29 100.0 36 ............................. GTGTCTTATGATTTAGCACTTTAATGCGGCTTTTAT 356660 29 100.0 36 ............................. GTTGATATTAAAAAGAGCAATCCGCGCCCTGTCTTG 356595 29 100.0 35 ............................. TATTTAGTATGCTATATAACACAATTACACATTTC 356531 29 100.0 35 ............................. TCAACACACACGATTCGGACGCGCCTAATGACTTT 356467 29 100.0 36 ............................. AACTTTCGCGGAACTCTGCTTCGGTTCCGTAAAGTG 356402 29 100.0 37 ............................. TTGGCGCGGAGTACCGCAAAGGCTTGATCTTTGCGCG 356336 29 100.0 35 ............................. TGATTGATGTTAGGGGTTAGTTGTGTTGTGCTAAC 356272 29 100.0 37 ............................. CATTACATATCTCTCGCAAGGATTGTATCGAGGATGC 356206 29 100.0 35 ............................. CGGTAACCTGGCGCGGTGATAGGCGCTCTTTTCTT 356142 29 100.0 36 ............................. TACCTACATAGGTGAGGACTGCGGGGGTGAGGTTGA 356077 29 100.0 34 ............................. TGGTGTATTTTTTAGAAATAGCCAACCCAAAAGA 356014 29 100.0 35 ............................. CAGTGCAAGATACTACAGAAGTGGAAATCAAACAT 355950 29 100.0 34 ............................. TGGAAAAATTAATTATGTCTGCCATCGCTGTCGC 355887 29 100.0 35 ............................. CAGCATGGGCGTGTGACCCCTGCGGAGAAAATCAC 355823 29 100.0 35 ............................. TCATTTTCCTACCCCCTTTCATTTATTTTCTTTCA 355759 29 100.0 36 ............................. CATTTCTCCCTTTTTACTAAAAACCTTCCGTTTTTA 355694 29 100.0 34 ............................. CGTATTCAGTTTCTTTGTCTGCGACAGCGATGGC 355631 29 100.0 35 ............................. GGGTGGGAAATTATTGATTAGTAGTAACACAATAA 355567 29 100.0 35 ............................. GAGTAGATCAGGAAATTCTATTTCCTGATCATCCA 355503 29 100.0 34 ............................. GGTGCCTCTTGGTGCACTGCGATGAGTCATTCTT 355440 29 100.0 36 ............................. TTAGGGATGAATTGATTGTTGCTGAAAAGCAACCAT 355375 29 100.0 36 ............................. GTTTGATGGTTGTTGAGAGATTTGATAGTGAAAAAT 355310 29 100.0 37 ............................. TAAAATCATAAGAGACAACCCTAATGGGGAGTATAGC 355244 29 100.0 36 ............................. AGAACCAGGCGCATGAGGAACGGGTAACGAAAGTTG 355179 29 100.0 35 ............................. TGTCACCCGTGTCAGCAGGTTTAAATACTTATATC 355115 29 100.0 36 ............................. GAATTGCAAGGTATGATTAATGATTTACCTTGCAGT 355050 29 100.0 35 ............................. AGGAGCACCGCGAAGCGCTCATTATATTCATCGAT 354986 29 100.0 36 ............................. TAGGTTCAATGAAAGGAGTAGAAGAAATGAAAATAA 354921 29 100.0 36 ............................. GAGACATCGACTTCGCGGGATTCTCGCCTATAACCT 354856 29 100.0 35 ............................. ACATCAGTCTAACTACACGCGTGTCATCTCACATG 354792 29 100.0 36 ............................. TGAAAGAGGTTATAAACGCATTCCTGTCTGATTCTC 354727 29 100.0 36 ............................. CGAAGATGTATGACAGACTGTATCGTATGATAACCC 354662 29 100.0 35 ............................. GAAGATCATCGAAAAGGTAGGCGAAGACATCCCCG 354598 29 100.0 36 ............................. ATCTTCTCCGTCAAATTTTTCCCACTTAATGAAAAA 354533 29 100.0 35 ............................. GGTTGAGTACAGCCTTGCCCATGTAATACCTCGGC 354469 29 100.0 36 ............................. TAGGAGCTGCGAACACCACTTGGGCTTATTTTATTT 354404 29 100.0 35 ............................. ACACAGCATTTTTTGCAGCATATGCAGACACAAAA 354340 29 100.0 36 ............................. GGTTATAAAACAGCTTAAAAACCCGACAATAATATT 354275 29 100.0 36 ............................. AAAGACATAGATGCCGTCATTGTGATGGAATAATTC 354210 29 100.0 36 ............................. CCTTTTCCCGACTCGTAGTCGGTTTCTGTGTGGGAG 354145 29 100.0 35 ............................. AAACAAACTACAGCTTATCGATGAATGCTTACCAA 354081 29 100.0 38 ............................. GAGTTGGTGACCTTGATGAAGCATTTATAACATAGCGC 354014 29 100.0 36 ............................. TAAAACCAGTCTTTGTAAAGTATGTACTTTTAAGCG 353949 29 100.0 37 ............................. CAAGATAAGCAGAAAGAGAGCCCGGCAAAACCGTTCC 353883 29 100.0 34 ............................. GGTTTTTCGTATTATAATATCGCTCCAGGTCCGG 353820 29 100.0 35 ............................. GGTGAAGTTACCCTTTCGGCTGCTGATATTGCCGA 353756 29 100.0 35 ............................. GACCTTGCAGTTTGAAAATTTCAGCCAACTCTCTG 353692 29 100.0 36 ............................. GAATCCCTTCTGTGCAAGCTCAATATAGGCATTGAT 353627 29 100.0 34 ............................. AAGATTTTAAGTATAAAGATTGGTCGCGTAAGGT 353564 29 100.0 35 ............................. AGAAGCACTCCAAGCAAAAAATTGCTCCTACAATC 353500 29 100.0 36 ............................. GCAGTTCAAGGGTAGTAATGAAAATACGGATTTGCC 353435 29 100.0 35 ............................. TAGAGTTCAATGCGATTACCCTTGTACTTTGTCTT 353371 29 100.0 36 ............................. TGGGGAAAGCGAACAAAAGGTATATCAATTCAATGA 353306 29 100.0 36 ............................. ATTCATCAAGCGGAATCAACAAACTCAGGTTTGACG 353241 29 100.0 36 ............................. CACAATGAGGCGTTGGCGAAGCAGCAAATGCAGAAT 353176 29 100.0 35 ............................. TGTCACGCGCTGCGCCGCCTGCCTTGATGTCTGCC 353112 29 100.0 36 ............................. ACAACATCAACAGAATCCTGGGTAAGTTTGGCGTGG 353047 29 100.0 35 ............................. TAATGATTCAGGGAATGAATATTACAAGGTCTTTC 352983 29 100.0 36 ............................. AACAACATATGAAACAACTGATACAATGACCTTTTC 352918 29 100.0 34 ............................. GAGTTTCACCCAAAATCGCTTTGGGTATTATCTC 352855 29 100.0 37 ............................. AATCTAGGACTGCAAAAAAGCTAACAGTTGCGTTAGG 352789 29 100.0 35 ............................. CGGTAGAAATGCGTGCCCGGGCAATGGCACACGCC 352725 29 100.0 36 ............................. CCCAGAGGGCTGCCTATGCTGCATCAGGTGTGAGGC 352660 29 100.0 35 ............................. AAGAGACTGCTTATGCTCCAAGCAATGCTCCAAGC 352596 29 100.0 36 ............................. CAATGTAGCAATCTCTCATTTCGAACGTATGCATCT 352531 29 100.0 36 ............................. ATAGACCAGCATCAATGGATGTTGACCACATTACCG 352466 29 100.0 36 ............................. GAGAGATCGCCAAACTCTTCCATACTTTTTTTCAAC 352401 29 100.0 35 ............................. GTACGACCACTGCAGCAAGCTACGGCACGGCAACG 352337 29 100.0 35 ............................. AGGATATCTCAAGTGCTACACCAGACACCCTTCAT 352273 29 100.0 36 ............................. GACCACGGCTGACTATTTTTTTTAGACTCATAAACA 352208 29 100.0 36 ............................. TCCGAAGAAACGAAAAGCGAGGGTATAAATTTAGTG 352143 29 100.0 35 ............................. GGCGGAGCGAGTCGGACGTCTCCGACTAACGTTTC 352079 29 100.0 35 ............................. GAAATCGTAGATTTCGGGGTAGATGAAAACGAGTT 352015 29 100.0 37 ............................. TGTCTCTCAAATCCTGCGTATGTTTTGCAAGAGCTTT 351949 29 100.0 37 ............................. ATACCCAATTGCACGGACTACATTAACTGTGTTTGTA 351883 29 100.0 36 ............................. ATGGTTTTCGCCACACGGATCACACGCCCATGCTGA 351818 29 100.0 35 ............................. GACTTTCGCGGAACTCTGCTTCAGTTCCGTAAAGT 351754 29 100.0 35 ............................. TCCAGTAGCACGCGGATGTATCTGGACGGCGACGC 351690 29 100.0 36 ............................. AACGCAGGGTGACACTGAATCCAGTCACACCCCAAC 351625 29 100.0 35 ............................. GGGAATTTGCGGAAAGAGAAATATGTCCAAGTTGC 351561 29 100.0 34 ............................. ACAATTTTAAATAGTTATCTCTCAATGACATGTA 351498 29 100.0 34 ............................. ACAATTTTAAATAGTTATCTCTCAATGACATGTA 351435 29 100.0 35 ............................. CCCACATCTTCCGCCCTGCATTCCCCAATACCTTC 351371 29 100.0 35 ............................. GTGTTTATGCGGGTTTGCTGGGATTTTGTGACAGA 351307 29 100.0 39 ............................. GCCTGCTGACTGTTTAAGAGTAGTAGAGCTTTACAACTC 351239 29 100.0 35 ............................. AAGTCAGGCACCGGTAAGGCTTCCACGAGCGTCGC 351175 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 136 29 100.0 36 CTTTCATTGAACCTATAAGGAATTGAAAC # Left flank : CAGAATTCAGTATTTGAAGGTGAGATCACGGAGGCCCGGTTGGAAGAATTGAAGATCAGGGCGAAAAAAATAATGAACGAAGAGGATGAGGATTCACTTATCATCTTTAAATCAAGAAATGAAAAATGGCTGGATAAGGAAATTGTCGGGACAGAAAAAAGGCCAGTGGACAACGTACTTTGACTGCGGAATGGTATTGTAGGGACATGGTGTGCCGTGTCCCTGTAAAATGATCTTGATTACTTGGGTAAATTGGTATTCATTCGCGGCAAAAATATTCCAAATGAATTTGTCAACCCGTGACAAATAGGGCAATGTAACCCATGCCAGATTTAATCGACGGGTCTAGTATGAGGATTAACCTATTATGAAACAACAATTTGTATTCATCATGTCAACCTATCGGGTTTTTTACATGACTGAAGATCGACGAGAAAAGTGGTCGTTTTTGACCTCAAACAGGCCCGTAAACCCTTGTATTTACTGCATCGGTAAAACGT # Right flank : TTGATAATGCCTCATCGGTATATTAGGTGTTTAGCGCCTAATGGCCGGTTCCGTGGATTTCAGTCCCATGTCATCGACTTTTTCGGTAATCTCTTGAATTAATGTTTGAATCATTTCTTCCTTTTCAATCTTTGGCGCAGGTAGCGCCATACTTTACCCCAGTTCAGGAAGACGTGCAGGGCTGCAAGGATTAACGTGACATATGCAAAATAGCGGTGTGGGACAAACCGACGGAGTTCAAGTCGTGACTGCACATAACCCGCAATTCCTGTGATGGAAATGGAGAATATGAGCAAGATACTGATTATATAATTTATATCTTCTCGCTTCATTCCATGCACGGCTGCATAGCAATCAAAATGGATTGAAACCACAAAGGCACAAAGCGTACGAAGAAAAAATTGAGACTACTTTGTGTACCTCGTACCTTTGTGGTTCATAAAAACTAACGCAGGAAGTGGTTTTTGCAGAGCGGACATTCACCAGCCATAATAACTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTGAACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 574620-574234 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFN01000001.1 Candidatus Brocadia sinica JPN1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 574619 37 100.0 32 ..................................... CATTGCTCCCACCCCACTTGCTTTAGGTCGGG 574550 37 97.3 33 ....................................T TGTAGGCCAAGTGCGAATTTCAAGGGTCTTTTT 574480 37 100.0 33 ..................................... CGTTGCGCAACCACCATCTACCGGCAACCCCTC 574410 37 100.0 34 ..................................... AGCCTAAAGCCTTGTAATGCTGTCTATTGCGATT 574339 37 100.0 32 ..................................... TAAAAAATGGCAATATCTGTAGCCCCCTGCCA 574270 37 91.9 0 ................................AA.T. | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 98.2 33 GTATGAATGAAGACCTGTAATAGAAGGGATTGCGACA # Left flank : GAAAATAGGAAAGACGTTTTAGTAACCATGACAGAGCATATTATTGACGGTATATTTGAGCTTATCAGGGAACTGAGGTTCGGTGGGGAATTGAGGCATTATTTATAATTTAATCGTAAATTATGAAGAGCAATTATATTGTCTGCTACGACATTACGAATGAAAAAAGGCTAAAGAAGGTCTTTAAAACGCTCTCGGGGATCGGCACGCATATCCAGTATTCGGTGTTTTTTTGTAAACTTGCCTGGCCGGAATTAACGGAATTGAAGGAAAAACTTAAAGACATAATTGATGGTAACGAAGATGATATACGGATTTACCCACTACCATCTCGTAGTAAATTTGTGGCGCTTGGTCAGGGAGACAGGGTTCCGGAAGGAGTGGAGATATTTTTATGAAATATTTCAGGAATATTTTCAGGCTAACTTTTAGGACGTCCGCTATAGTAAAAACTCGATTTTGTAAATACTTGTCAATACAAGAGAAAGGAAAGGGGTGCC # Right flank : AGGAGAGAGGATGGACGAGGGAGAAGGCATGAAGGACGAAAGAGGAGGGAGGGGGAAGGAGGGAACATGGGTGAAGAAAAAGAAACGAGAAGGATAGAACGTGTGAGAGATTTAGAGGTTTATAAGTTGGCGTTTGAAACTGTAATGGAGATATTTGAAATATCGAAAAGTAGACTCTTTCTGTAGAAGCTAGCTGATTGCCTTTCGTCTGTCGTCCCTCGTCCATCACCTTAATGTGTCTCATAAGGAATTATTGCCCCAATGGAGAAGGGATTGCGACTTGCAATAATCATAAAGGGCTGTTTGTCAATTCATAGACGATGTTGTATTTTGCAGTTGTTTTTTGACGGTCATTTCAGTATCTTTTATCACCACATTCAAGTTTGGCAAAATTCAAAAATCCAAAACAAAAAAGATTTGACCATTGGGTATTTTCAGGTGAAATATAACCTCAATGTACCTTTTGCCATAATTGGGGGCAGTCAGGCTTATGACCTGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGAATGAAGACCTGTAATAGAAGGGATTGCGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 778959-779985 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFN01000001.1 Candidatus Brocadia sinica JPN1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 778959 36 100.0 31 .................................... GGGTGAATTGTCCATTGCTGTCAATTGCGCT 779026 36 100.0 30 .................................... GTATGGGGGTGTGTTTATGATGTTCTTGAT 779092 36 100.0 30 .................................... ATACAACTCATTCTTGTTTGTCCTTGCCAT 779158 36 100.0 30 .................................... GGGTCGATTGGGGGATTGTTTACACGTGGG 779224 36 100.0 30 .................................... GAAATGGTTATCCAATTCAATCAGCAGTTC 779290 36 100.0 30 .................................... TTTTGGCCTTTGCTACGTATTATGCTATTG 779356 36 100.0 30 .................................... GAAGGTAGTTAGAGGTGAGTTTGAGTCTGA 779422 36 100.0 30 .................................... TCCTCCTCTTTGCGGGTAGTTTTTCTCTGC 779488 36 100.0 30 .................................... ATACAGAGGAAGAAGCCAAAAATGCGGCAT 779554 36 100.0 30 .................................... TCGATTTCTTCCCTAGTGTTTCTCCCTGTC 779620 36 100.0 30 .................................... CTGACCAAGTAGGCAAATACATCGTTTTTG 779686 36 100.0 30 .................................... GATTCCTTAATGATCGAGTCTATTTCCTCT 779752 36 100.0 30 .................................... AACCTCCAATAAGTTCCGTTCGTGATTGAT 779818 36 100.0 30 .................................... TTACCGGGTTGGAGATTGAGTTTCCCCAGC 779884 36 100.0 30 .................................... CGGTCTTGATGTGATATACATTTGTCTTTG 779950 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 16 36 100.0 30 ATTGTACCACACAAATGCCTGCCCGCAAGCCACAAC # Left flank : CTTGAGCGCAGATTGTGTCATGAATGGTCAACGGCTCCCTTTAATGACTTCGTTGCATCATTACGCCGCAAGTGTGCGAAAGGTAATCTGCGGCGAGCATAAGCGTATGGAGATCCCTGCATTATGAGCTTTGGAGGCTACCGGAGCATGTGGATAATCGTCATGTTTGACCTGCCCACTGATACGAAGCATGCACGCAAGGCTTATCATGAATTTCGGGAGGAATTATTAAATGACGGTTTTACCATGTTGCAATTTTCCGTTTACGCACGCCACACACCAAGCGAGGAAAATGCCGTGGTTCACGAAAACCGGGTAAAAACGTTTCTACCGGAAGACGGAGAAGTGAGGCTGTTAAAAATCACAGACAAACAATTTGAACGTATGAAGATTTTCAATGGAAAAACGCGTAAGGAAACAGAAAAAGCGCCCAAACAACTCAGTTTTTTCTGAATTGTTCGGGCGCATCACGAAGAAATACAATAGGTTACAGAAAGTCT # Right flank : CACCTTCTGCGCATCTTTACCGAAACGCCCAATCTCTGTTGCCCAGACAAGCCTTGCTGCATTAACGGCATCCTTGAATCCCCTCTGCATGCCAAAGAGCATGGCCTTTGCCTCGCCATCTACTACGCCGGGAGTGTTGCCGTAGTGTGTCTTAGCTGCCAGGTACCGTTCCGGGATGCTGGCAAAGGCGGTGTAGAGGTTAGAAAGGAAGTTGGTGGTATGGGTTTGTGGGTTCGAGAGCAACCCGTTGATCCACGCCTCCAGGAAGATGTCCTGGAGGCGCCGGGTTACGGGCTTTGCCATTTCCCTGGTTGTCTCATCAATTTGCTCTTGTGACTGCAAAGAATCCTTTAATAATTTTAATTGCTCCGGTGATATCTCTCCACTTTTTAAGATTTCTAAAGCACGTAAAAATTCTTCCGTTGCAGGCGCCGCTCCGATTTGTATCTTCCCAGATTCAGTCATCCTCGCCGCTTCCGTACTTGACGCTCCCATCTTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACCACACAAATGCCTGCCCGCAAGCCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //