Array 1 76488-75980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMO010000007.1 Providencia rettgeri strain 2020EL-00095 NODE_7_length_117302_cov_27.075989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76487 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 76427 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 76367 28 100.0 32 ............................ TCATCGGGCTCAACAATACGGCCATCAAATGG 76307 28 100.0 32 ............................ AATGCAAAGATGACCACGGGTTTAAATATTTC 76247 28 100.0 32 ............................ ATGAATTAATGGTGGGGTATGTCTTACTTAAA 76187 28 100.0 32 ............................ TCAATGTTTAATAGGTCGTCTTTTTCTTGATA 76127 28 100.0 32 ............................ TAATGAGTCTACCCAAACTTGGATTCGTTGTT 76067 28 100.0 32 ............................ ATAACAGCAACTGAATATTTCGACGCAAAACC 76007 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : TCAGGTGGGTTAAATCTCAACCTTGCTGCTTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATTCCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGAGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86595-85125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKMO010000007.1 Providencia rettgeri strain 2020EL-00095 NODE_7_length_117302_cov_27.075989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86594 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 86533 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 86472 28 100.0 32 ............................ ATGTATTCCGCTGAACCTCCCCAAGCTTCACA 86412 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 86352 28 100.0 32 ............................ TTGGGCTGCAAAGAAAGCGGAATCAATGCTCC 86292 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 86232 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 86172 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 86112 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 86052 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 85992 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 85932 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 85872 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 85812 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 85752 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 85692 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 85632 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 85572 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 85512 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 85452 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 85392 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 85332 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 85272 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 85212 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 85152 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.6 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //