Array 1 19411-16543 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRVA01000033.1 Prevotella copri strain AF24-12 AF24-12.Scaf33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 19410 33 100.0 33 ................................. AGGAAGCATCTGCAGTAAAACCACCTCTAAAAC 19344 33 97.0 32 ................................C GTATACCACGAGAACGAGAGGGAAATCTACTA 19279 33 100.0 32 ................................. CCATAGGGCTTAAAATTTTTAGAGCGGACAAA 19214 33 97.0 33 ................................T TAAACATACGTGTGACAGATTCACCACGTTCAA 19148 33 97.0 32 ................................T TATATACACATTAGTGCGATTCGTCCTATGTC 19083 33 97.0 33 ................................C TGCCATTGGTTGTTGATGTAGATTTCCGCAATG 19017 33 100.0 35 ................................. ACTTATTGTTCATTAACTCTAGTGGAAGGCTGGGG 18949 33 100.0 34 ................................. TCTACTCTCGATAGGTCTGCATTGATGTAGGTAT 18882 33 100.0 34 ................................. AAGGTTATCTAATTTATCGTTTTTACCATGTAAT 18815 33 100.0 34 ................................. TAACAACACCTTTTGGCTCCAAGCAGTACACTGA 18748 33 97.0 34 ................................C TATCCATTGCATCGGGCCAACAGTAGAGCCCTCT 18681 33 97.0 33 ................................T GGTTAGGAGTCTTGAAGTATTCGTGAGTCTTAA 18615 33 97.0 32 ................................T GTACTGTAATCGGTGAAGGTTCAACCACAAAT 18550 33 97.0 34 ................................G CCGACCGCATGCTCGACATGGGTTTCTCTGACGA 18483 33 100.0 33 ................................. GAAGAAAACGATGAAGAAAGTGTTTCTGATGAT 18417 33 100.0 32 ................................. CTTACTGCAGTACTGTCTGTCATCTCTGATTT 18352 33 97.0 32 ................................C TTCGAGGAACACCAAACTTTGTTACTTACTCT 18287 33 97.0 32 ................................T AACATTTTTAGATAAGATGTGCGTACACTTTG 18222 33 97.0 33 ................................T TTTGATTTTTACGACGACTTAAATAATGATGAC 18156 33 97.0 33 ................................C TTACGTTATTGCATCGGTGAAATATCACTGAGT 18090 33 97.0 34 ................................G TCAAATCGGAAGGGAGGAGAACATGCACCAACAA 18023 33 100.0 32 ................................. GCGTAATGACCTCATCACCTTCTGTACTGTAA 17958 33 100.0 32 ................................. AAGGTGGATATACTTTGTTTTGTTTGGGTAAA 17893 33 97.0 33 ................................T GATGTCCCTTTGCTAGAGTTTAGCGGATGAACC 17827 33 100.0 33 ................................. TGATAGGAGGGTATAAACAATCTGAAAAACCAT 17761 33 97.0 31 ................................T GCTCATAGGCTATTTGCTGCATAGTACATAA 17697 33 100.0 33 ................................. AGAGATGTTGTATTGAATTATTATTTTATGTAA 17631 33 97.0 34 ................................T CACCAGAACTCTTCTTGTAATTAGCTTTCTTTCG 17564 33 97.0 33 ................................T TCATATTATGCTCTAACTGATTATGAATCTGAA 17498 33 97.0 33 ................................T TGATGAAGATGAAGAAGAGAAGCAGTCCTAGGG 17432 33 100.0 34 ................................. TCGGATAGGCTGTCAGCAATAACGACCTCGACCT 17365 33 100.0 33 ................................. GAGCGTATGAAGAAGTTTATCGAGATTATCACA 17299 33 100.0 33 ................................. GACAATGAAACAGATAATAAAATACAAAAGCAG 17233 33 100.0 32 ................................. GAAGCTGGCCGGTGTGTATAACGCTATCAAGG 17168 33 100.0 33 ................................. AATCGTGGTTCTAAAACGCAGTTGCAGATTGCT 17102 33 97.0 32 ................................T TTTGGGCAATGCCAAAAGAACACCCTCGGTAG 17037 33 97.0 32 ................................T TCCAAAGCTAACATGGTAGATAGAGACTTTTG 16972 33 100.0 33 ................................. GGTTGCCCAAAGTGTCGATCGTGAGCGTACCGC 16906 33 100.0 32 ................................. AATAAATCTCAACATCCTTTTGCAACTCTTTC 16841 33 97.0 34 ................................C TGAAGAGAAGAGTTATAAACTTGTTGAGAAATCT 16774 33 97.0 33 ................................T ATCTTACGTTGCACATCAACGAGACCAGCCATT 16708 33 97.0 33 ................................T AGAGCCACCGTAAAGCACTGGCCTTGGTTGAGC 16642 33 93.9 34 ...............T................T CCTTTACCATATCACTTATTCTTGCGTCTGCCCA 16575 33 93.9 0 A...................A............ | ========== ====== ====== ====== ================================= =================================== ================== 44 33 98.2 33 GTCACACCCTTCGTGGGTGTGTGGATTGAAACA # Left flank : TGATGATTATCCAGTGTTTTTAATCAAGTAGTGTATGTTTGTATTGGTTACTTATGATGTAAACATTACCTCGGCTCATGGTGCGAAACGTTTACGCAATGTAGCAAGGGCGTGTTTGAATTACGGAAAGAGAGTTCAAAACTCTGTTTTTGAGTGTATTTTGACGGAATCTCAGTTTTTCGTATTGAGGGACCAGTTAAAAGGAATTATTGATACTGAACAAGATAGTATTAGGTTCTATATTCTTGGGAAAAATTGGAAACGTAAAGTTGAGACTTTGGGTAAGGATATGGGGCTTGACTTTACTGGTGAGCTTATCATTTAATGTATGAGGGTGCGAACCTATAGTATTGCAAAATAACCTATAGTTTCGCACCTTCTTAAAATCAGTGACTTACAAATATTTTGCTTTTTATAATATTTTACGTGTAATTATTTTGCCATCTTTCGCAAAATAATTATCTTTGCATCATGATATTCAGCTATTTGCTGAATATGCA # Right flank : GAAAACAGATTTTATTTTCTGAGCCCACTTGAAAAAGTCATTTTTACGAAAACGTGCCATTGATTGTCAATAAGTTACAAAGACAAAAAATATGATTCGGGACTTTTTTTAAGTGGACTCAGTTTAGTATTATACAGCAAACTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGTCTCCTCCGGTCACTGCATTCGACTCCTTCAGCTATCGCATTCGTCTCCTCCGGTCACTGCATTCGACTCCTTCAACTATCGCATTCGTCTCCTCCGGTCACCGGATTCGACTCCTTCAGCCACCGGATTCGTCTCCTTCAGCTAATGCATTCGACTCCATCAGCCACTGCATTCGACTCTTTCAGCTAACTCAGCCGTCTCATTCTGCTAACTCAGTCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAAGTCGTGAAATGAAGTAGATGAAGTCGTGAAATGAAGTGGAT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTTCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //