Array 1 147696-148623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRT01000020.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147696 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 147756 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 147816 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 147876 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 147936 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 147996 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 148056 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 148116 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 148176 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 148236 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 148296 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 148356 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 148416 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 148476 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 148536 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 148596 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCGTCGCGCCAGGGAGCGGCGCTACAGGCTCGGGTGGCCCGCCTCGATTTCGGACAAGGCATCGCTGAGCAGCGACAGCAACGCACCGTTGATGTAGGCCNNGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9833-8428 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRT01000002.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9832 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 9772 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 9712 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 9652 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 9592 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 9532 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 9472 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 9412 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 9352 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 9291 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 9231 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 9171 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 9111 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 9051 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 8991 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8931 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8875 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8815 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8755 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8695 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 8635 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8575 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8515 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8455 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 138290-138617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRT01000043.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 138290 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 138350 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 138410 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 138470 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 138530 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 138590 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGCCGTTCACTGCCGTGTAGGCAGCTAAGAAAAGAAGCTGGAGCGACGGCTGGCGGCAATTCGTGTTCACTGCCGTGTAGGCAGCTAAGAAACCGGACGTTCACGCTGGTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 138829-139937 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTRT01000043.1 Pseudomonas aeruginosa strain AZPAE14922 AZPAE14922_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138829 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 138889 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 138949 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 139009 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 139069 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 139129 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 139189 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 139249 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 139309 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 139370 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 139430 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 139490 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 139550 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 139610 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 139670 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 139730 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 139790 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 139850 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 139910 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTCCAGAACGGATCGTAGACGTTCACTGCCGTGTAGGCAGCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //