Array 1 6929-7254 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000054.1 Leptospira noguchii strain HAI1536 ctg7180000004347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6929 37 100.0 36 ..................................... ACGGTCTATAGAACCGACTTTATCGGGAGCCGGTAA 7002 37 100.0 33 ..................................... GATTGGCTGGAACAGAAAGCGACTGAATTTTGC 7072 37 100.0 36 ..................................... TTTTAGTTTTGTCTGTAGGGAATGTTGAATCTGAGT 7145 37 100.0 36 ..................................... TTTTAGTTTTGTCTGTAGGGAATGTTGAATCTGAGT 7218 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Left flank : AAATCTTTCGTAGAAAGATTACCACATTCTAAAGGTAGAATTTTATCGTCTTCGATTTTTCCCCATTGAATTGAGTCCTTTTTTTTAAATCGTATATAGTTGGTTGCCATACAAAATACCTAAACGTATAGTAAGAATTTTATAAAAATGCCATATTTGTGATCAATATAATTTTAAAATACAACAATCGGTAAAGAACATATTTAGTTGAACAACATTTTTTGTTTATTTTTATAGAAATCCCTCCCCATTGCAAAAATGAAGCGTTCAATATTCTTGACTTTTAAGAGGCGATCATTTTATGTTATAACACTTTTTGCGAACCTGTTTTTCCCGATTGATTGCCGTCGGTTCGCGCTCAAAGGATTTATCTCTGTTTGTCAATTTGGAGGTTTTGCTTAGCATTTATATAGTATGTCACGTTTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTTCTAATGCATAAATTAGTATCTTTGTGGCCGCT # Right flank : CATCCGCAACTTTATCTCTATTTCTTTCTCTTATCAAAGAGCGGGTTGAAACGTCAAAAAAACGATTTATTAGAAAGAACTTTATTTTAGATTTTATAAATGCTTTCACTAAAAGTAGGATTTTAGGTAGTATAAAATAAAATTATATAACGTAAGTTAGACGCCGATTATTTTTTTGTAAAAAAGTGTGGGAATTCCTATGAACGGTTTGAATTCAACTGAAAAATGTAGAAATTAATACATTCTATAAATTGAATATATAAATCTATTGTTAAACTTTACAGTAAAATACAATTATGAGGCGCAGCTTGTGGGAACTTTATGTAAATTTTAATTTACTGTAAAGTTTTCAAAAATGTAGATTTGTTCTAAATCAAGTAAGTTGTGTTTTATCATATTTCCTGAATTGGAGATAACGTATTTTTGTAAATATAACGACAAACCTTGAATGATTCGATAAAATAGAAATCGCTTAGAAACGATAACTCACGTAACGTACC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 54117-54730 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000029.1 Leptospira noguchii strain HAI1536 ctg7180000004353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 54117 37 100.0 35 ..................................... TAACAAAATGAAAATAATCTCAATCGCATCACTAA 54189 37 100.0 36 ..................................... CGATCTTTTAGATTAAATTAATTTATGACGGGCTTT 54262 37 100.0 37 ..................................... TTTTTTGATTTCGTAGATTGTCCATGCGACGCATCGT 54336 37 100.0 34 ..................................... GATAAGAATATCTTTTAGCCAGTTGGGAATCATT 54407 37 100.0 34 ..................................... AAAACCGATTTCCATCGTAACACCGTTTCCAGAA 54478 36 97.3 36 .........-........................... AAATTTCCCACGCGTGGGAAATTTGGCTCATTCGAG 54550 37 94.6 34 A....................A............... GTTTCGTTAGTTGGTTTTGCGGAAGATCCTCCAA 54621 37 91.9 36 ........T..T....G.................... ATGATTTAGTTTTGATACAATATCAAGTCTATTCGC 54694 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.2 35 GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Left flank : ATTGTAACTAAAGACAATATATCGCATTATGCTTCTTTCATGCAATTTATTGACTGGAGTTAAAAACGGGTTCGAATTCGCCTGGTTTTTTTTCTCTGAATTCACAGGATTGATGTGTAAATTATTAGATTGGGTTATTTATTATGTAGTCATAACTTTATAAATGAGTTTTTAGATTGAATTTCTACTAAACTTTTAAATCAATTCTCTGAAAATTTATCCCCTAGACATCCAGTTACTTAGCCGTAAAACTAAAGAGTTTATAGTTTTATATTCTTGACTTTAAAAAGTGGACCATTTTATGATGAATCGCTTTTTGCGAACCTGTTTCTCCTGATAAATTGCGGCCCATTCGCGCTCAAGCGAATAACTACCGTTTGTCGATTGAACCGTTTCGCTTAACATTTATACAGTATGTTGTCAACAGGTTCGCGATAATTATGTCTAAAAAGTCTAATAAAGCTTTCCCTAATGCATCAATTAGGGCCTGTGGTACCGCT # Right flank : CTTTGTTTGAGATGAGTTTTGTTTAAAATTTTCAGAATTTATCTGTAAAAATCATGGCTTACTTTAAACCTCTGTATTCAAAATCTGGAAAGAATACTTTAGAAAATCAATATATAATTGATTACAAACTATTTTTAAAAATACTAATATAATCTACATTTTAAGTAAAGATAAAGTATTTTCGAGATGGCTTTTACTAGTTCCTACAAAATTAGATACTCATAAATGTTATGATAAAGTGTCGGTTAACGTGTTTTCGGGGTAATCCAATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCAGGATTAAATTTTGTTTTCGAGCGAACCCTCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGAGCCGGATTCGCCCCGGTTTTCTTTCTCTGAATTTCACACTATTGAAGTGTAAAAGATTGAGTATTTTATTATATAGTTCTGAGTAGTATTTCTAAAAATTCTGTTTTACCATTTAGCCCTCTGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTGGTTTAAAAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 110331-108935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000029.1 Leptospira noguchii strain HAI1536 ctg7180000004353, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 110330 37 97.3 36 .......T............................. AATGACGATGCGCTTTTGTCCTTTTATGTTAACTAT 110257 37 97.3 36 .......T............................. AGGGGGAGGGATTACCGCATTAGTAAATTATTATGT 110184 37 100.0 35 ..................................... ACAAGCAACGCCGCATTCCCACGTTTTAAATTGAC 110112 37 100.0 34 ..................................... CAAATGGCTCCCACTTGATTCTTTGCGTAGTAAA 110041 35 94.6 33 .................--.................. TGGAGAATTCAGACTACTCACGGGGATACAATC 109973 36 97.3 35 ..............-...................... TTTGCCTTTTTTCAGGCGATGCTTGAACCGCTGAT 109902 37 100.0 35 ..................................... TTTGCCTTTTTTCAGGCGATGCTTGAACCGCTGAT 109830 37 100.0 36 ..................................... ATTTTGCGGCCTCATTGGATGTATTTGTATTTTCTT 109757 37 100.0 33 ..................................... ATTGAGTTTCCACAACGGATTAAATTCAAACTC 109687 37 100.0 36 ..................................... ATCGACGAATCAATCGCAAGACCAAGATCATATTGT 109614 37 100.0 34 ..................................... AGGAATGGGTGTTTAATAATTTCGTAATCAACTC 109543 37 100.0 36 ..................................... TAAGATACAAAGGACGATTGATGGTTAGTACTGTTC 109470 37 100.0 37 ..................................... AATTTTTGCGGTTCGCTTGCCGGAGAGGAGTTTTGAA 109396 37 94.6 34 .......T...........A................. CTCGAGAATTATATTTAATCTTTGTCCGTGTCCT 109325 37 97.3 35 .......T............................. ATTTTTCCAGATGGTAAAATCGTAACTCCAATTAA 109253 37 100.0 33 ..................................... TGCTTCCGTCCTTTTTATAAAGTTTGGATAGGA 109183 37 100.0 33 ..................................... TGCTTCCGTCCTTTTTATAAAGTTTGGATAGGA 109113 35 94.6 33 ....................--............... TGGAGAATTCAGACTACTCACGGGGATACAATC 109045 36 97.3 38 ................-.................... TTTAAGTTTTCCTGGGGTATCAGAGTCCTTATTTGTGT 108971 37 91.9 0 .......T..T............G............. | ========== ====== ====== ====== ===================================== ====================================== ================== 20 37 98.1 35 GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Left flank : TTAAGTAATACGAGTTTATAGAGAATTTTACTATGTTGTTTCAAAACTAAAAACTTTGCGAATGTTCACCGACGAGTCACTGTTTTATTGAGTTTAGATTCAATTGTTTTCAAACTGGAAATGGCCTTTCAAAATCTCTGAAAATTCGTACAACCCGAGAAGCATTTGTTTAAAATTTTAATTTGAGACTGCTTCTAAAAAATTCTTTTGCTTCTTTTCAAAAAATTTTAGTTAGGTGAGAACTTTAATTAGCTTAAATCTATCCCTTGTTATAGGTTTGCCTTTGAGTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATTTATTACGGACCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATTGAACAGATTTGCTTAACAATTGTGCAGTATGCTGAAATAGGTTCGCGATTATTATGTCTAGAAAGTTTAATAAAGCATTTTATAATACATTATTTTCAACCCTATTAAGCCGCT # Right flank : GTTGTAGATGTCAGTTTCTGCGTATTGAACTACTGTTTCTTCTTCTTGTTTGAAGAACTACATAATAGAGTGTCTAAAATTCCGTTCCTGAAACTGGATTCCTTTCAAAATTTATAGTACTCTAATATATAAGAAATACTATTTTAGTGAATTGATAGGCAAGAATGATAATTTCTAAGTTTTGTGGTAGTCCCTACAATTTTATGAAAATTGAATATCAAACTGTTGCAGGCTAAATGTATAAACTATGACTGATTTCCATTGAACAAAAGTTATTAGGAAAAAATTTTTCTAAAAATAGGAGTTCCTACATTCATTTTTATTTTTACAGACTGAGGTCTCTTTTTCGGAGAATGACTTGGTTTTATAAGTTTTACTGTGAAAATTTAGTATTTGTGGTAGTTCCCACAAATTAAGTCACATTGTAAATATACAGATTTTAAAATACTTTTTTATTTCAATTTCTGTATCAGTTTCCCAAATCAAAAAATTTTACTGAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTGTTTGAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 25267-25887 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000064.1 Leptospira noguchii strain HAI1536 ctg7180000004339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 25267 37 100.0 36 ..................................... ATCTACACTTGGACAGGCAAAGGAATTCCTCCGCAA 25340 37 100.0 34 ..................................... ACTTAGCTACTACTGCAGTCATTTGGATTTCAGT 25411 37 100.0 36 ..................................... CTCTCTTGAAAACGTAGACTCCCGACTCGTTTCATT 25484 37 100.0 37 ..................................... AATTGAAGAAGACGCAGGAGTTCTTACACTTCCCGCC 25558 37 100.0 34 ..................................... CAATTTGTGTAAGCATCACTGTAAGACTCTGTTT 25629 37 97.3 38 .................C................... CAAGATTGAGAGATAGCTCTTCTCCTGTTTTTAGTCGA 25704 37 100.0 36 ..................................... ACCCCCGTTGAATACCAATCAATCCTGGAAAAACTC 25777 37 97.3 37 ..................T.................. CTTGTAATTAGTGGATAAAGTTGTTTCTTTTTTTGAA 25851 37 83.8 0 ..G..............CT...A....A.......T. | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 97.6 36 ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Left flank : CGATAAACCATAAATTCGGAAATACACAATCTATTAGAGCTTCTATATTTTTATAATATTCCATCATTTACTTATAATAAGGTCCTGCAAATTTTAGAAACAAATCTAGTTTGGCCAAAATTCTGGACGCTATGGTTTCTGGTTAATCAAGTCTTCAAGTCCAGCGTCTGGACAATCATCTCAACAAGAATAAAAAGATTTTTGAATGAAATTTAAGTTAAATTTCAAAATCAATCTTTTTAGTCACAGAAACTTAACAATCTGGAATCTAATTTTCTTGACTTTAAAAAGCAGATCATTTTATGATAAAACGCTTTTTGCGAACCTGTTTCTCCCGATCAATGGCGGCCCTTTCGCGCTCCAGCAAGTAACCGCCATTTGTGGATTGGATGGGTTTGCTTAGCATTTATATAGCATGGTAAATTAGGTTCGCGATAATTATGTCTAGAAAAGTTAATAAAGCTTTTTCTAATACATAGATTAGGACCTTTATAGCCGCT # Right flank : CATTGAAAACATCTTCGAAAAACGTTGAACACGACTTAAGTAGTCCCTGAAAAAGTGTTCAAAAGAATTCCAAACTTAAAAGTTGAGAATTGGTTCTAACTTTTAAAGAGGGCAATTACGCCTAACTTCTGCTTCTCGCTGCGTTCGGAATTGCTAATGCGAGCCCGCACTCCAGGCGTTGCCACATTTGTTTTGTTGTTAGGTGAAAGTAGATTATCGTCTTACTTTAAATCATTAAATTCACAGGTAATAACTCTATGGGAAGTATAAAAAATTGGGCTACTGGCCAATTATCCATTGTTTCTGAATGTTTAAGTTATTATTTTGCCTTTATAGCGGTTTTTAATTTTTTAACTAAAAATTATAGAGACTTGTTTAATTTTGAAGACATATTTTTAACGTGAGCAGGGCGTAACGCGAAAGGGATCGATGCGGGGTCAATAAATTGAATCTAAAGACGATTGTTGTATTATGTTTCCTGTATGCAATTTATTGACCAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTCCTTTGTTTGTGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 108578-109046 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000064.1 Leptospira noguchii strain HAI1536 ctg7180000004339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 108578 37 100.0 37 ..................................... TCTTTCGAGGAGTGACGAGTTTAAAGTATTTAAAGGT 108652 37 100.0 36 ..................................... AGGAATGGGTGTTTAATAATTTCGTAGTCAACTCGG 108725 37 100.0 35 ..................................... TTGTGCAAACGTGATAGCATCGTCATTGCGCTCTT 108797 37 100.0 34 ..................................... TAAGCCCACCTAGACCAGTTCCACAGGTCAGGCC 108868 37 100.0 36 ..................................... AAGTTGAATGATATTATTCAGAATACAAATCCACAA 108941 37 100.0 31 ..................................... GAAGGCTATAATTTTTCAGATGCTCAGCCTG 109009 37 83.8 0 .....GC....C....C......A...A......... | A [109030] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 97.7 35 GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Left flank : TTCAATTTTCGTAGTAGTTCCCACATTGGACTGTTTCGGAACAAGTTCTTAAAGAATAATAGAGTTGTTGAAAATTTTATAATCTAAATCAAAAAACTTTTTCAATCAACCATTTCCATAGAGCAGAAACCGATGGAAAATTAATTTTCAATAAATCTAATATTTTTAAAATAAACCTAATTTCAAAATTAGCAAAATCCAGAAAACAAACGTTCCCTTAATTACGTCTCTTTAGATAGTTATAAATTTATAATTTTCTACTTTTTTAATCTATATTATTGACCCCACAAAGACGATTATTACAATAAAACGCTTTCCGCGAACCTGTTTCTCCCGACAAATCACGAACCTTTCGCACTCTTGTATTGTTTCTCTGTTTGGCGATTGAACTGTTTCGCTTAACGTTTGTTCAGCATAGCAGAAATAGGTTCGCAATTATTATGTCTATAAAGTCTTATAAAGCTTTTGTAATTCATAATTTTGGATCCTATCAAGCCGCT # Right flank : CGATTATTTATATAGTTTCTTTGGATTCAGTCGCATTGTGAAGTTTATAGATTTTTAAATCGCATTCTTACTGTTCAATTAAGTGGTAGTTCCCACAGATTTTGTCGCATTACGGACTTTTAAATATTCATTTTTTGTAATTAGAATTTGTATGTAATAGTTCCCACATTTTATTTTTACGAAAAAATCAGGTTTTATAAAGCAAATCTATTGTTTTGAGTTTTTTTCTGGTTTCATTTTTTACCGGGTTTTTGGATATTTTGCGGTGATTTTACTTTTTATATTTTAATTCTGGGTAGCATTTTATTTGCATTTGCCCCCGTTTTCAGGAACAATTCAACACCAGCACACGTATAATTTAACTTCTTCTTTCAGAAAAGAGTAAAATCATCAGAATCCAATTCGATTTCCTGTTTAAAATTCTCTAAAAGTCTGCCTCAAGCCTAAAATGATCAAAATTTGATCATGGAAGATTTACAAATACCCAGATGTGGTGACGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATCTCTTCTTTTAGAGAAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 65868-65416 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWD02000062.1 Leptospira noguchii strain HAI1536 ctg7180000004348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 65867 37 100.0 36 ..................................... GATGAGGTTGTCTGTATGTGGATGTACTAGGAGGAT 65794 37 100.0 36 ..................................... TAAAAAAGAATTCTTGGCCTTTGTTGAGGATTTTAA 65721 37 100.0 37 ..................................... CAAAAAAGAGGTCTTTCCAAGTCCGAAACGAATGTAT 65647 37 86.5 24 .............................GA.C..CT GAGGAAATTCCTCAGTTGATTTTT Deletion [65587] 65586 37 91.9 34 ...C.........GT...................... TGCATAAACTTCATCGTGACCTTGCAAGCTCCAT A [65565] 65514 37 89.2 24 .............................G..C..CT GAGGAAATTCCTCAGTTGATTTTT Deletion [65454] 65453 37 89.2 0 A..C.........GT...................... | A [65432] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 93.8 32 GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Left flank : CAAAGAAAAAATATAGTTTTTCGCCTAACATCAGTTAAGAAAAATTAGTAGCTTCTCTATACACTTATAATAACTGCTAAAAACTATATTTCGAATTTTTGTATGTTGTTTCTCAGAATTGATTTGTTAAATCGTAATTTGTGGTAGTTCCCACATTTTTTATATAAAATTTAGTTTTCTATTAAATGTCAAGTTCGGTTATAAGATCATTCAAAATCTCTAAATTCATACAATTTTAAAAAAATTTTATATACTCTTTAAATCCTGCTATAAGTTTTCCTTTGAGTAACCGATCCTTTACAATGAAATGCTTTTTTGCGAACCTGTTTCTCCTGATTCTTTGCAGACCTTTCGCGCGCTTGTATTGATTCGTTGTTTGGCGATTTGACAGCTTCGCTTAGCATTTGTTCAGCATGCTAAAAATAGGTTCGCAATTATTATGTCTAGAAAGCCTAATAAAGCTTTTTATAATACATAATTTTCAACCTTATTAAGCCGCT # Right flank : TGAACGCGGATTTATATAACGTGAGTTCAGCGTAAAGAATTCATTTTTCTGAAAAAAGCTGTGATCTTAAACTTTCTGAATCAATTCCTAAAATGTGGGAACTCATACTGTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGATTTTAAGAAAAAATTCTAAAATTGTAGGAACTCATACTTTTAAAAATTTGTAATGTGACTTAATCTGTGGGAACTACTGCAAACCACGGTTTTAAGAAAAAATTCTAAAATTGTGGGAACTCATACTTTTAGAAAATTTTTCTCAATCAGAACTCACGTTAAAATGAGATTTAAATTTTGATGATGCCGCAAAACAGCGATTTTATGTAAAAATCGGATGGGCGATGGACTCTTTTTGTAATAGTTCCCACAATTTTCAGAGTTTAACTGGTAAATCCACAATTTGCAGTAGTTCCCACGGGTTAAGTCGTATAAAAGAGTTGTTGAAAAATTTCATAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:0, 3:3, 4:0.69, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCTTCTTACTTTAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //