Array 1 177726-180317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWH010000005.1 Erwinia amylovora strain Ea01-03 Ea01-03_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177726 29 100.0 32 ............................. ACAGATAAGGACAACGGTCTGACTACTGAGCA 177787 29 96.6 32 ............................A AGTTGGCAAGTGGTATTGTTCCCTGATCAACG 177848 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 177909 29 100.0 32 ............................. CTTTAGTAGCCTTTTACGTCTATAGCCTTTAT 177970 29 100.0 32 ............................. CACGGCCCCCGTACTATTGAATCCACCCGTGT 178031 29 100.0 32 ............................. CAGCAGAATAGAAGCCATAATGTCTGTGCGTC 178092 29 100.0 32 ............................. AGAGTTCCCGCTCTCGCGCGGCTTTTCTTTTG 178153 29 100.0 32 ............................. GCATCATCATACGCTTTACCATCACTGCTAAG 178214 29 100.0 32 ............................. ATTGTATCAGAAATATCTATCCAGTCTCTCTG 178275 29 100.0 32 ............................. CTATCTCTATGGGTTAGGCTGATTGGCAGCGC 178336 29 100.0 32 ............................. GTAGAAAAATGCCAGGCAGGTGCAAAATCAGA 178397 29 100.0 32 ............................. TCAAGGGGGTTCAGCGGGTAAGCGCGAGCGTC 178458 29 96.6 32 ............................T CTTTACCGTTCCATACCGGCTCCATCGCCGAC 178519 29 96.6 32 ............................C TGATCTAGGGCTGGAACTTTGTGACAGAGAGG 178580 29 100.0 32 ............................. CCGAAAACCTGTCCCGTCTGCAAATCTGAATT 178641 29 100.0 32 ............................. CTTAGCAAAATGCCCTATTACCGCGCTAACCA 178702 29 100.0 32 ............................. TCATCATCTAGTGAATTCAAATAATTAAAATT 178763 29 100.0 32 ............................. CCAGGTCGTTACGGTCGGCCTTTTCAGCTGTC 178824 29 100.0 32 ............................. CAGTTGAAACCGAAACGGAGTATCGCAAGCAG 178885 29 96.6 32 ............................A GAACGGCCCGCATTGCATTAGCGGTTGACTCT 178946 29 96.6 32 ............................A TTTACGGGAAACGGCGAGGAAGATATTAATTC 179007 29 100.0 32 ............................. CTCAGTATGATGCAGAAGATTCTGGAATCAAT 179068 29 100.0 33 ............................. CACAGTGTTGGTGCGAGAAGTTCAACAGAATAG 179130 29 100.0 32 ............................. AGATTTGAAATGCCACGAGAAAGGCGCAAAGA 179191 29 100.0 32 ............................. AGGCGGTTAAACCAGTGGAGGCAGAAATCAGG 179252 29 100.0 32 ............................. TGGCCGCCCGATGACCGGGATACAGTTGGCAG 179313 29 100.0 32 ............................. CCAGTGCTCCTTTTCGTCCAGGGACTGACTTT 179374 29 100.0 32 ............................. ATAGCGCTGGCAGAGAAAGACGAGCCGTCCCT 179435 29 100.0 32 ............................. CAATTGTTGATTTAAAGCTATTACCTGACGGC 179496 29 100.0 32 ............................. AATGCGGATGCTGTTCCATCGGCGTTAACTGT 179557 29 100.0 32 ............................. GTTACTCATTGAGCGCCTCGCTACTGTTTACA 179618 29 100.0 32 ............................. CCAGCTCAGCCGTGAGCAATCAATCCTCATTG 179679 29 100.0 32 ............................. TGCGCTCTCAATATATGCTCTGCGCCATGCCT 179740 29 100.0 32 ............................. CGTTTTCTGAATAACTTCTCCTTGTCGTAGAA 179801 29 100.0 32 ............................. TCATTACCGCTGGTTACGGCATCGATCACCGG 179862 29 100.0 32 ............................. AGGCTCGATACCCATTTTCCCGATTTCTTTTC 179923 29 100.0 32 ............................. ACAGCAGTGTTTTTTCGCTCTCAAATTTATTC 179984 29 100.0 32 ............................. TGTTGGAGATTGTGAGGGCGAAAGACCAGCGC 180045 29 100.0 32 ............................. GCATTCGCAACTGGCAATGGTGCAAATGTAAC 180106 29 100.0 32 ............................. TTATTGAGGGTGATTCGGGGGCGCAAAATAGA 180167 29 96.6 32 .................A........... AGCTAGAATGCTACGCATCAGCACTGATTAAA 180228 29 89.7 32 A............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 180289 29 82.8 0 ..A.......A.......A.A.....T.. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCATGGTCAATATGGCTGGGGATTTTTCAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189375-191355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWH010000005.1 Erwinia amylovora strain Ea01-03 Ea01-03_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189375 29 93.1 32 NN........................... CAAATTATTGCTATTCATGGGCTGTCTAATAA 189436 29 96.6 32 ............................T CGAATCATAGTTACCCCCTCAATCGTCCGAAT 189497 29 100.0 32 ............................. GTTTAGTGTAAATGATGATTCCAGACTATCAA 189558 29 100.0 32 ............................. GTTGCAACGGCTTTTGGGAAGGATCACAAAGA 189619 29 100.0 32 ............................. CAGCTCATTAGCGATACGGGTATAACCATTAT 189680 29 100.0 32 ............................. GTGTTTACGGTACGGCGTGGCGAGATATAGCT 189741 29 100.0 32 ............................. CCGAATGGTATGGCGAATGGTTGAGGGAAAGC 189802 29 100.0 32 ............................. TTCAGTGGCATCCGGATGGACAGTTTCCCCGC 189863 29 100.0 32 ............................. AGAATCAATTGGCTCAAAATGAGTAAATGTAA 189924 29 100.0 32 ............................. CGAGCGTGCCAATTTCTGCCAGAGCTTCGGTA 189985 29 100.0 32 ............................. GCCGGATTATACATTACTGGCATTTGAGCCAG 190046 29 100.0 32 ............................. CAATGATGAGGGCAGCAGAACGAGACTGGAAA 190107 29 96.6 32 ............................A AACGGGGATCACAGTGTAAAGCTGTAATCCCC 190168 29 100.0 32 ............................. GCGATTGCCACCGCCAACCGACTTCAAGAGAT 190229 29 100.0 32 ............................. GAAAAAAATACAGTTGGATTGCAACTAATCAG 190290 29 100.0 32 ............................. AAACGCGACGAATGGGATGAAACATCTCCGAT 190351 29 96.6 32 .................A........... CGTCGAGACGATGCGCCCGCTGTCGATAAACA 190412 29 100.0 32 ............................. CACGTCTTTTTTCGACAGCACACGGAGCGCGT 190473 29 100.0 32 ............................. AAAGGGGAATAGCTAATTTAGCTCCGGTTTTC 190534 29 100.0 32 ............................. CCAACATAGCTACATATATCGCGGCTTCACTA 190595 29 100.0 32 ............................. GCCCGGTGTGTCGTCGATGTAGAGCATGTCTA 190656 29 100.0 32 ............................. TAACGCGCATGACTTCATTTTGTATGAATTAC 190717 29 100.0 32 ............................. ACCTGGTGGGTAGTAGATATCGCTGGCTGCAA 190778 29 100.0 32 ............................. ACCATTTGATCATATCGTTCAGTTTGTCCCAT 190839 29 100.0 32 ............................. CGTGGCGAGTGGACGAGCTGGGCGACCTGCCC 190900 29 96.6 32 A............................ ATTTTACATTCCCACCGAATTTTGCAGCTGCG 190961 29 96.6 32 ........T.................... GATGGGGTACAGCTGCTTCCGTTCAGCCAGAT 191022 29 100.0 32 ............................. CGGGGTAATCTGTGTTCATCATCACGGCGCAG 191083 29 100.0 32 ............................. CATCTCTATAAATTGCGAGATATGAAAAATGA 191144 29 100.0 32 ............................. TTAAATATCGAACCGAAAATAATTTTTATAAA 191205 29 100.0 32 ............................. CTGTACACCGTTGACGGCGGCACCTCCCACCA 191266 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGTTGTCGA 191327 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================ ================== 33 29 98.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : GGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGC # Right flank : AATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCAGGCTACATTACCGGTAAAAGACGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTCTTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //