Array 1 194471-195230 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNU01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 179 NODE_2_length_454815_cov_33.4443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194471 29 100.0 32 ............................. CCGTCCACGGTACAACAATCAACGCCGGGAAT 194532 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 194593 29 100.0 32 ............................. TCTTCAGAAATGATGAGTTTTTCCAGTCCGTC 194654 29 100.0 32 ............................. TGTCGGACAGTATCTGGTTGGCTATGGGGGGC 194715 29 100.0 32 ............................. GAATTAAACGTTACTGGCATGATACCGTTCGG 194776 29 100.0 32 ............................. GTTTCGCAGGTACGGTTAGTCCGGCCAATTCA 194837 29 100.0 32 ............................. GCGACGGCGTTTATCAGTGCGAACAGGACCAG 194898 29 100.0 32 ............................. TTTTAGACATGGCAAACGCCGACAGGATGAGC 194959 29 100.0 32 ............................. AATCAGAAACAAACAAGACTTACTGGATGTTG 195020 29 100.0 32 ............................. GGCGTCGAACCAACAGTGCCCGGGCAGGATAC 195081 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 195142 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 195203 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTATAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211375-212788 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNU01000002.1 Salmonella enterica subsp. enterica serovar Rubislaw strain 179 NODE_2_length_454815_cov_33.4443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 211375 29 100.0 32 ............................. GATGTGTCAGGAACGATGCAAATTGCGGACAG 211436 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 211497 29 100.0 32 ............................. CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT 211558 29 100.0 32 ............................. ATCGCGCCCTCATCTCCCCAGATTTTTGATAC 211619 29 100.0 32 ............................. TATCACTACCGGATCGGATCGGCTGAATTGAA 211680 29 100.0 32 ............................. AATATATAGTTATATATATGTTAAATAACCTA 211741 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 211802 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 211863 29 100.0 32 ............................. GTTTCTCCCTTGAGTAGTTCCTTTCGATAATT 211924 29 96.6 32 ................A............ CAAAACTGGATTAATGAGGACGGGTACGAAAT 211985 29 100.0 32 ............................. TTTACCCCCTGTTTACTGCAATAGCGCGGATA 212046 29 100.0 32 ............................. GTCGCGGGTCGTGTGTCTGTTTTATTTGACGT 212107 29 100.0 32 ............................. CCATCTTTTTCGCGCCTTGTTGGTCAGGCAAT 212168 29 96.6 32 ....A........................ CACATCTCCAAACTGGAACGCGCCAACGCTGC 212229 29 100.0 32 ............................. GAAAACTCTAAATCCAGCACGATTCGTTGTTT 212290 29 100.0 73 ............................. CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG 212392 29 100.0 32 ............................. GCCAGCGCTAGCGCGCTCGCGAAATGGGAGCC 212453 29 100.0 32 ............................. GCTATTGTGATGCAGTCAATGCAATGGGGTAT 212514 29 100.0 32 ............................. GCCATACCCACAACCTCCAGACGCCCAAGCCC 212575 29 100.0 32 ............................. CAGGAGGAATCAACTCTCGACCCTGCTGAACC 212636 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAGGAG 212697 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 212759 29 86.2 0 TAA.........T................ | A [212783] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //