Array 1 5229-2491 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRN01000039.1 Millisia brevis NBRC 105863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5228 37 100.0 34 ..................................... CCGTCCCGGCAGCCGGCGGACGCGGCGGCCGGGC 5157 37 100.0 33 ..................................... TCGCCCGTGAGGCGGCTTCGGGTGCTTGAACTT 5087 37 100.0 36 ..................................... GCTCGGAGCTTGCCCAGTTGTCGATGACGATTGTGC 5014 37 100.0 36 ..................................... CACCGTAATGGTGACCTCTCGTGTGACTGTAATCGG 4941 37 100.0 38 ..................................... TTGGCGGTGCCGGTGGTGTGGGCGGGCTCAACACCCGC 4866 37 100.0 38 ..................................... CAAATGTCGCACGGGATAACGTCAAACCATGAATCTTC 4791 37 100.0 36 ..................................... TCCACATATTCATATCATTCTCTTTCTATTTGATTA 4718 37 100.0 37 ..................................... GGCGCCGGTGAGCGCGATGACAGCGAGCATGGTGGAC 4644 37 100.0 35 ..................................... CACGCAATCGGCGCATGCGTGCCCGTCGGCGTAGG 4572 37 100.0 36 ..................................... ACGTACCCTCTTCCAGATTTCATCGATCTGGGATTG 4499 37 100.0 34 ..................................... CGGCCATGAAGGACCTCAGTGGGATTCGTCGAGT 4428 37 100.0 39 ..................................... CAGGTCCGCGTAACGCAGGTTCGCGTCCTCACCTATCGC 4352 37 100.0 38 ..................................... GAAACGCGGCGACCGTCGTTCCAGTAAAGACGGAAGCA 4277 37 100.0 36 ..................................... CTCAAATTCGTTACATCATTCGGGTTCATAATAATA 4204 37 100.0 33 ..................................... AGTGTCGAGACTGAGTGCGAGCTCTTGGTACCT 4134 37 100.0 38 ..................................... AAAGCTGTCGCCAACATCGTTGGCGGTGGATGCCCATA 4059 37 100.0 40 ..................................... CCGAGCGGCGGTCTCGATCACGTAGGTGAACTGCCCGACG 3982 37 100.0 34 ..................................... CGACGAGCGCGGGGCTGGTTGCTGGTGGTGGGCT 3911 37 100.0 40 ..................................... TTCGCGCGCATGAACCCGCACGTGCATCCCGATTACAAAC 3834 37 100.0 40 ..................................... GCATGAACCCGCACGTGCATTCCGATTATGCTCGCTGCCC 3757 37 100.0 32 ..................................... AGTTCATCGGTGGAACGAAATGCAAGGCTTTT 3688 37 100.0 40 ..................................... GCGGCCACCCACTGCCAGTCGTCGAAGTCTCCTCCGACGA 3611 37 100.0 33 ..................................... CTTCCACCCATCGTAGGTGGCGACCAGTTCGGC 3541 37 100.0 35 ..................................... CGTTGCGCGTTCAGATCCTTCTCGAACACCTCCTC 3469 37 100.0 36 ..................................... TTACCGCCAGGTTGGCAACGATTCGGTCGGAGTCGG 3396 37 97.3 38 ............................G........ GCCTTGCTGTAGCAGTGTACATCGTCGTAGAAGCACGA 3321 37 100.0 33 ..................................... GGTGGAAACGTCGCCATGAGCACGAGCGGCACG 3251 37 100.0 37 ..................................... TCTCCGGTCTCGAGCAGACCTTCGAGGCAGCCCTCGA 3177 37 100.0 33 ..................................... AACAACACGAACACAGCCGACTCTCCTGTTCCG 3107 37 100.0 34 ..................................... GGAGGTTACTGGTCCCCCACCCGTCGGTTGTACT 3036 37 100.0 38 ..................................... TACCCCAACCAGACGTCGTAGTCGTTCATCCCCCAATC 2961 37 100.0 34 ..................................... CTGGAGCCGACCGCGAAGGGGGCCAACGAAACAA 2890 37 100.0 34 ..................................... GATAGCAACGACTGCGCCGATAATCATTCCGATG 2819 37 100.0 36 ..................................... ATCAGGGTCTGTTGCGACCAGACTCTGAATTCGAGC 2746 37 100.0 36 ..................................... TCATTGCGAGTACGTCACCTTGGTCGTATTGCAGAA 2673 37 97.3 36 ...G................................. GCCGCTCGCCGTCCCACTGGTGATGACCGCAGCTAC 2600 37 100.0 36 ..................................... CGGTATTCACCACCTTCCGTATGGGTCATGAGACGA 2527 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 38 37 99.9 36 GTCACAAAGCAGGTCTCGCGACAGAGCGAATTGAAAC # Left flank : CTGAGACGGTCCGCGCTGTGCCGTACGGCACACTTGTACCGTTCGGCCTGGTCGGTGGCCCTATAGCGGGTGGTGCACGAAGTGTCTGTGACACCCTTTGGTGTGTAGTGCCTCTGACCTGCGGATATGGTTCGAGATATGTGTGCGGGCCGCGGAGGAAACACCTCCTGGAGGGGGTGGTGTGCAATGGGCCTGCATCGCCGCTGGTCAGGGGCATCGTTTCGGTGATAG # Right flank : CTCTTGTGAGACCCGGAACATGTCAAGGTCGGTGAGGCAGTTTCTTATTCGGATGTGATGAGTGTTGCGGGTGTGGGTTGGTTGATCCAGGCTGCGGTGGGTAGTGCCGGTGGGGTGGGTCGTTGGTGGCGGAATCGTGCGGGGTTGGTGGTGTAGGCGGCGTTGAGGGTGGCGGCCCGTTGGGTGTCGATGGTGGCGGCAGTGTTGTAGTGCACGGATGCGGGGGTGTGCAGGCCGATCCCGCTGTGGCGGTGGACGTGGTTGTAGTGGTCGAAGAACATGATGGCGAACGTGCGGGCGTCGGCGATCGAGCCGAACCGGCCGGGGAACGCCGGACAGTACTTCAGCGTCTTGAACTGGGCTTCGGAGTAAGGGTTGTCGTTGGATACCCGGGGGCGTGAATGGCTGCGGTCGACACCGAGATCGACCAGTAGCTGCGCGACGGGTTTGGAGGTCATCGAGGTGCCCCGGTCGGCATGCAGAGCGAGTTGGCCTGGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAGCAGGTCTCGCGACAGAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 17613-13536 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRN01000009.1 Millisia brevis NBRC 105863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 17612 36 100.0 37 .................................... GCGTGCACGTCAGACACATGGAACGCGAGCCGCATAG 17539 36 100.0 40 .................................... CGGGACAACGACGAGCTCCGGGACCTCTGGGAGCAGACCA 17463 36 100.0 38 .................................... ATGGCGTCGCCGACGAGGTGCGCGAGCAGGCCGGGGCC 17389 36 100.0 38 .................................... GGAGACGCCACGGAGAGCCCGCCACGCCTTCTTCCCGT 17315 36 100.0 35 .................................... TTGAACGGCACCAGCAACCGGCCGGGGTTGCCCTC 17244 36 100.0 38 .................................... TAAACAAATAATGTTTGTCTTCAAAATTATATTCAGTG 17170 36 100.0 37 .................................... CTCGGTGGTAGGTCATCGTGCCGCTGCGGACGTATTG 17097 36 100.0 40 .................................... AGGACCTGCTCGTTGTCGAGCAGCGTCGCCAGGAGACCAG 17021 36 100.0 37 .................................... AGGGTGGCAACGAGGTTGTCGCTGTCGATGCGGTTCG 16948 36 100.0 38 .................................... GACCCTCATGTCAGTGTCTCCGAATCTTCGGGGCCCCG 16874 36 100.0 35 .................................... TCGTCGCGGAGCGTCCTTCCTGCCCAAGTGCTCGA 16803 36 100.0 37 .................................... CAGGGCGCCACGCAGGACGGACACATGGTCGGCCAAG 16730 36 100.0 37 .................................... ACTCCGGAGGTCCGGCGGGATCTCGCCCCGGTCCAAG 16657 36 100.0 35 .................................... ACGGGGCGCTGCCAGATCTCCTCGAACCACTCCGG 16586 36 100.0 37 .................................... AGCATCGGCGCGGGCAGGTTTACGGGTCGCGGACAAG 16513 36 100.0 40 .................................... GCGAACTCCATTGCGGCTTGCCACGTGTCGAACTCACCCG 16437 36 100.0 37 .................................... GCGTGTCGGACCAGCCGGTCGATCTGGCCGCCTGCGT 16364 36 100.0 34 .................................... GTCGGCCGCGCCGCCGGTTTCGACATTCTCGTGA 16294 36 100.0 39 .................................... GGCGGGCGGGGTGATGATTGCGCGGCGGGCGTCGCCCAT 16219 36 100.0 39 .................................... TCGAGGATCACTTCGACGTACGGAGACTTCCGAAGCTCC 16144 36 100.0 38 .................................... CAGTAGTTGCGCTGGTACCACTCCCACGACGACTCCGG 16070 36 100.0 37 .................................... TCCATGTTCACCATGTCAGTGCCTTGTCTCGTGTGGG 15997 36 100.0 38 .................................... GCCCGGCGATTCCGGGCTTGCGTACGGTGATTTCGCGG 15923 36 100.0 36 .................................... GGCTTCGCCGGAAACGGCGACGCCGGCGCATCCGCG 15851 36 100.0 36 .................................... CGCGGATCGCTGTTCACCGGCCTGATTCGCGAACTC 15779 36 100.0 36 .................................... CCGGTGTAATCACCGTCGGCCAGCAACGACCGCAAT 15707 36 100.0 36 .................................... CGAACGTAAGCACCAGCGCGCCCCGGGACACCACGG 15635 36 100.0 37 .................................... CGCCGCTTTTGACGTTGCGGATGTGGTCGACTTCTCG 15562 36 100.0 37 .................................... GAACCTGCTCCGGGTGCCGTTGGGCAAGAATCTCCGC 15489 36 100.0 38 .................................... GATAGAACTCGAAGTTGTGCCCGTCGAACGATCCTCCG 15415 36 100.0 39 .................................... CTTTGGCTGTACTGGGCCCAGAACTCCGCGCGGCAGGTG 15340 36 100.0 38 .................................... CGGCGGCGCTTCACCTCCGCGCCCATCCCGGACAGCAG 15266 36 100.0 39 .................................... CCGGCTGTGCCCCGGCGGTGGCGCGCGGTGGGCGCTGGT 15191 36 100.0 38 .................................... CTGTTCTTCTTGTACCCGCCGTGCCCGTCGGGGATCGG 15117 36 100.0 36 .................................... CGGTCCCGAGCGTGGTCGAGGCGGACACGCCCGGGC 15045 36 100.0 39 .................................... GAGGTGCACACCGACCTCGGCGGCGTCCGGTGGCAGCAG 14970 36 100.0 39 .................................... CACCGTCGCGAATGCGACACCGCGCGGGAGGTTGGCCGC 14895 36 100.0 36 .................................... AAGATAGAAATTATATTTCTCCAGAAATTAAGGCAG 14823 36 100.0 39 .................................... CATCACGAAATCCGCGGACCCGACCATGATGTCCTGCTT 14748 36 100.0 36 .................................... CCGAGCCACTTCCACCGGTCCTCGTCGAGCACGGTG 14676 36 100.0 37 .................................... CCGAACAGCGTGATGCAGTCGTTCGGCAGCACGGTGG 14603 36 100.0 37 .................................... ATCGGTGCCGACCTTGCCCCAGTCCTGCCCCTTGCGG 14530 36 100.0 36 .................................... CGTCCACGTCGCCGACGTGGAGAACGTCGCGAGCTG 14458 36 100.0 39 .................................... AGCGATCTGGTCGGCGTCTGCGCTGGCGGCCATGGGCTC 14383 36 100.0 40 .................................... AGGGCGGTTGTTGCTACCGCACCGCTGGCCGTGCGGCTGT 14307 36 100.0 38 .................................... GGCGAGGAATCGGTCGCGGGGTAGGGCGCGGGTGATGG 14233 36 100.0 39 .................................... GCCGATGGGTCGACGAACAGCGACTCGGGCGAGTAACTG 14158 36 100.0 36 .................................... CGCCAGGATTCGGCGCACGGTCCGCGGATCGGCCGG 14086 36 100.0 35 .................................... GACCAGTCGCCGGCGGGGGTGAACCGAGCTGCTAT 14015 36 100.0 37 .................................... GATGGGATGCGGGCACGGACGCCCGAACACCTCCTCG 13942 36 97.2 38 ...........................A........ ATGCAACACTATCAAACGTTGTTTTCCTTGCGCCATCG 13868 36 100.0 39 .................................... CTGGCTGCTGGTGGCCGCCAGGTAGGTGTGGGTGATGTG 13793 36 100.0 37 .................................... ACTCGGGTCTTGGTTGGGATTCATGCCTGCGCTCCGG 13720 36 97.2 38 .............G...................... GGCGGCGGCGGTGGTGGCGGGTCGTTCTCGACGACCGG 13646 36 100.0 39 .................................... ACGAGTTGAACGGTCTTCCTCGGCGCGGGGGCCGGGCTG 13571 36 86.1 0 ................AT.G....T...G....... | ========== ====== ====== ====== ==================================== ======================================== ================== 56 36 99.7 37 CTGATCTCCGTCGAAATGACGGAGCCACATTGAAGC # Left flank : CAGATACCCAGTTGCACGAAACCCTCAGAAGGAGAACAGCCATGGCCCGCCGCCGTCATCTCATCGCATATGACATCGCCGAACCTCGACGCCTGCGACGCGTCTGCAAGGTCATGGAGTCCTACGGAGAACGTTTGCAGTACTCGGTCTTTCTCTGCGACCTGTCTCCGCTGGAGAAGTCGAGATGGCGAACCGAGATTCATGACGAGCTCGAGTACTCCGAGGACTCTGTGGTGGTGATCGATATGGGACCATTACACGCATGCAGCGAGGTGACAACCATGGGAGTGCCTCGCCGGCTCCCGGCCCATGGCCCCACCATCCTGTAGGTTCGAGAGCTGACTGCGCAGAGCTTCCCCTGGGGAGCGCTCGCACGCAGGTCAGGCCGCACTTTGACACCTTCACAGAGCTATCGGGAGGGTCTTCCGCGATATATCGCCGGAGGACCTCTCGCGGAACGCTGCAACACCGCAGGTCAAGCATGGTAAATTTCGGGAGCC # Right flank : AAGATCTGTTGCAGCGACTGTGACGCATGCAACCCGACATGCGTGAGTCGAGATGGCGTAACCACCTCGAAGTCGGTAGCCGGAGGCCAGGGCGTGGGTAGGTCGGTGGGCCCACGCTGGCCCGTGCGACTTACCGATAGCCGCGTCGTGGCGGGCGATGGCGAGGCTTGCGCGCCGCAGGCCGACCCCACCGTGCGCGCGACAACGCCGGTCCTCGGCGAGTTGACGGAGTCCCTTCAGGTGCATCAGCCGGTAGTCCGAGCACCGAGTGCGATAGCTCCGGATAGCTTGGACCATGTGTCTGGATGGGCGGACACGCGGAAATCGCCGAATGGTGGAGGGCCGCGAAGCTCGATCGGACTGTGCGGCGCGGCCCGGGCTGGAGGAATGGCGTAGTTTCAACTATTGTCAGATCGGTCTGTTGACGGGCGAGGGGAGAGTGTCGGTGCTCGGCGCAATACAGCCGACTTCCTCAGCTTTGACAGCCGCCGTGTGGGTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGATCTCCGTCGAAATGACGGAGCCACATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //