Array 1 53762-53338 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVCP01000048.1 Bacillus thuringiensis strain AFS064999 AFS064999_73_A7_Contig48_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 53761 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 53695 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 53629 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [53611] 53562 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 53496 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 53434 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 53369 32 71.9 0 ....T....C.......C.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 7 32 91.5 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 8.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60739-60046 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVCP01000048.1 Bacillus thuringiensis strain AFS064999 AFS064999_73_A7_Contig48_140411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 60738 32 100.0 35 ................................ GTAAAGGATTGTAAGAGGACAGTTACGGACATAAA 60671 32 100.0 33 ................................ ACTTACTTTAGCGCAACTAGAGCATATTCATTT 60606 31 93.8 34 .........C.......-.............. CCGCACCCTGCGAAACAATAACAGTTGTTGTCTG 60541 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACTCATTGAGGTA 60475 32 93.8 33 .........C.....................C CATTGGTTTATCAGGAGTCATTGGCTTATCTTT 60410 31 90.6 36 T.......-..........T............ ATCATTTGAGTGCGATCTATTTCAACAGCATTTAAA 60343 32 96.9 34 .......T........................ ATTTGGTAGCGCATTGTATATGGATGCACGATTT 60277 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 60209 32 96.9 35 .........C...................... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 60142 32 90.6 33 T..........AG................... GGATCAGTAAACGGCAATGAAAAACCCGCCGTC 60077 32 93.8 0 .....................CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 94.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACCGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //