Array 1 30275-28962 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKH01000004.1 Dielma fastidiosa strain JC118 Ga0244565_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================== ================== 30274 36 100.0 29 .................................... ATTTAATAACTCTTGTATTACAAATTCTC 30209 36 100.0 30 .................................... GTAACGGTCATCACAAGTATCACCGGTGGC 30143 36 100.0 28 .................................... AATATGGATATTGATGTTCGGGGCTTTA 30079 36 100.0 29 .................................... ATTTCGTTCAGTTCGCGCAAATCCTCCGC 30014 36 100.0 30 .................................... TTAGGATTTCGTCACTTTTGTCGATCCATT 29948 36 100.0 30 .................................... GTAAAAATTACATGAGGCGGTTCAGAACTG 29882 36 97.2 30 .................G.................. TCATGTTTAAAGCAATATAACTTCCCAATA 29816 36 100.0 30 .................................... TGAACCTGTACTCTCTCGGTCCCAAGCCGA 29750 36 100.0 30 .................................... TTGGATTGCGCTTTTTCTTTACCCATTTAA 29684 36 97.2 29 ............G....................... AGATCACCAACTGAAACAGGGGAGTTCAA 29619 36 100.0 30 .................................... TATACATGGTACACTACTTATAGGTTCAGT 29553 36 100.0 29 .................................... TCATTGCTTGTAACAAGCATAGTTACATC 29488 36 100.0 30 .................................... GAGTAATTGAGGGAAATACTTATTGTCTTA 29422 36 100.0 30 .................................... TCTATTATCTCAACAACATCGCCAGTGCGC 29356 36 86.1 29 ..............................AA.ATT TACTTGGAAATTGTTCATGATTGCCATTT 29291 36 86.1 29 .....AA.............A....A.......A.. CTAGATTAAAAACATAGGTATTATGAGTT 29226 36 97.2 29 ....A............................... ATTTCTGCCGATTCCTTATCAATGTATTT 29161 36 83.3 126 .............A..............A..A.TTA ATTTTGTAATCATACTCAATTTTTCAAATTCATATATGACCTAATTAATTATTATGCTAAGTCATAAATTTGATTGAATTACACTTGTTAATATATTCAAGTTGATTTTTATTAATTGTATTTTAT T [29129] 28998 36 86.1 0 ....A..T......................C..A.T | T [28994] ========== ====== ====== ====== ==================================== ============================================================================================================================== ================== 19 36 96.5 35 AATAGTGATTCTAGTAAAATGTATTTGTGCTTAGAC # Left flank : CTTCATTTCTTAAATGTTAAAAGGGATAGCTTTCTAATTATTCGAGATTTCAAACAGGGATTAGATTTATCACAACAATTATATATTTTGGATAAGATGATGAGGAATGGAAAAGTGTATGTTGTATTATTCCTTAATGATGCAGAATTTTATTATTATACAAAAAATTTGATTTCTCATTTATTTGTAACAGATTATAAAATTGATTGCATTTTTAATAATGAAATTATTGAGAACTGTGAAAAGAAGATTTTGTATAAAGATTTTTTAGATCGTAATGAATATCATAATATTATTAAAGTTCTAGAAAAACAGCATACGTTTCTTAAATACAATGAATTATTATCTGAACGAGCTGATTTTATAAATTATTTTTTTGAGAAATATAACATAGATGATGTGATATAATTGGAAAACGGTAAAATTGCAGAAAATATTACATGATGAATGAAAGAAAAGCCGGTGAAATACGTAGGAAATATAGTAAAATCTTGCCATCT # Right flank : AATGTTATTAATTGCATTTCAAAATTGTTGCTTTCAGCCTCACACTTCCTTGACACCCCTCATATAATATGTTATAACACAGTTAACTCTTTGCACTGCATTACATTCTATTGAATGCGAGATCAACAGTACAAACTGAGCAGGCGATGAACCTTTTAGGTCATGGGGCCGGGCTGCTGAGGCGGCAACAGATGTTAACTTAGCATCTGTGGGACAGTTGTATGTTCCACAGATGTTTTTTTTAACCATTTGCGGAATTCATTCTCAATGAAGTGCCATAAGAGATAAGACATTTTCGTACATTTATGACGAAATTAGGAGGACTCTTTTATGACAACAGAAAACAAAACGCCATGTGAAATGGCAATCAGCACCGCTGACAAGAATGAAGCGGTAATTATTCGCAAACTGTCAATGGTAAGTTTAATTGGCAACACCGCATTATCCGGTTTTAAAATGTTCGCGGGCATCGCAGGCAACTCAGGAGCTATGATTTCCGA # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGTGATTCTAGTAAAATGTATTTGTGCTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 68893-69593 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKH01000006.1 Dielma fastidiosa strain JC118 Ga0244565_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 68893 33 100.0 34 ................................. AAGCAGCGCAGAAGATACGCCTTGATTTTTTGCG 68960 33 100.0 34 ................................. TTATTTATTTGAAGCAGAGGTTACAACCAAAAAG 69027 33 100.0 33 ................................. CATTTTGTATATTGGTGTTGTCATGAAAACACA 69093 33 100.0 35 ................................. CTAACATACAGACAACGATCCATGACAATCGCTGC 69161 33 100.0 34 ................................. TTAAGCGTATTAGCGCCGTATGCGTTCCCCCGGC 69228 33 100.0 34 ................................. ACCATTTACCTTAACATTCATGCCCTCATAATCT 69295 33 100.0 33 ................................. TAAACTTATCAAATGGCAGTCTTATAATTGAAA 69361 33 100.0 34 ................................. CTTTATTATGAATAAGATGCAGTCACCTGGAGGT 69428 33 100.0 33 ................................. TTGACACATCAGATGCCCATTGATGCCCTTACA 69494 33 97.0 34 ....................T............ TTCTGATTATGAAGATGTGAGTGCGTAATTGATT 69561 33 87.9 0 .............G.A........A...C.... | ========== ====== ====== ====== ================================= =================================== ================== 11 33 98.6 34 GTCGAGAGTCACATGGCTCTCGTGGATTGAAAT # Left flank : ATGAATCAGGTGTAACGCTGAAGCAGGTTTCGGTTACTCAGCAGAACCATGATCATCCTATTTTATGGACCATGGAAGAGACATCGTATTTGAAGTTTTACATCTTTCAGATAATATAAGTTTTTTGAGTGTTAGAGGGCTGCGTGGCTCTCTTTTTTGATGAAACCTCAATCATGAAGTTGGATAAATCTGAATATTCATCAAGTAAAGGATAGCTGGATTTGTTCTTCCTTTATGAAGATTTTGTATCTGCTCCATTCAAAGTTTTAGGATGTGGTATAATATAAATATATGTGGGAATTATATTCTGTTAACCATATAAATGAGTGCAGTGCGAATGTGAAGCAAACATGAAATCTCTGGAGGATTCGCACTAAAAATTAACGAATAATAGTGAAATATAGGTGGTTGATAACTAAAAATAAAGAGTATGAATGTGATTTAATGATAATTTTGTTGGATTATTGGTAAAATAATTATTTTTTATATATTATTTTGCT # Right flank : TTAAATACCAGTGGACATATAATAGTCAAAGGCTGGTCGAGAGTCGTAAGACTCTTTTTAATATAATTGTCATATTTTATATGGAATCTAATCATGTTAAAATGATTTCAGGAGGGAAGTATATGAACAATAATGAAATCAATGCAGCATGGTTTATTTATAAATACCATTGCAATCCAGAATCAATCAAAGTGGTTATGATAAATGAGGTTGTCCCTGAGGATGAAAACGATGATTTTTATGTACCTAATTCATCCTATTCTCAGTCAATCATTGGATTGTTCAGCAATGCTGGAATGTTGTGTGATATGCAGGAGCTGCTTGAAAAGGGAATCTATGTATGTAATGCTGTTAAAACACCTAAAGAGCAATCTGTTATACCTATACTTCAAATAAAAGATTCATTGGATGAGCTGGAAGCTGAACTTGCCCTTTTTGATAATTTAAAGGTTATCATGCTGATGGGAGATGTTGCACGCAAAGCTTTTAATAAGATTGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGTCACATGGCTCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 94640-95079 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKH01000006.1 Dielma fastidiosa strain JC118 Ga0244565_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 94640 33 100.0 35 ................................. CAAAATGCTCAAGCCAATCGTTGATCTTTGATTTT 94708 33 100.0 34 ................................. GTTTTTAAGACCATGTATAGATCCTTATCAGATA 94775 33 100.0 35 ................................. ACGTTTTTGCTCAAAGTCATTGGTTGCATCATAGC 94843 33 100.0 35 ................................. ACGTTTTTGCTCAAAGTCATTGGTTGCATCATAGC 94911 33 100.0 34 ................................. TAATTATTTTGAATAATTAATTAAAGCAAAAAGC 94978 33 100.0 34 ................................. TGCTGTTTAGCACTGACTGTCTACCAGCCTCATA 95045 33 90.9 0 ................A...C.......T.... | A,C [95072,95076] ========== ====== ====== ====== ================================= =================================== ================== 7 33 98.7 35 GTCGAGAGTCGCAGGACTCTTGTGGATTGAAAT # Left flank : CATTTAAGGAAGAATGTAAAAAGAGTGATGAATTATCGGAAGAAATTTGTGATGGAGATCTTTCTTGTGAATTTGAAACAGTAGCATCAAAATTTAAAGTGATTGATGAAGATACAGTCACTGTTCTAGCTGATAAAAAGCTTGCAGAAAAAATACGATCAGGTAAATTTGTTTCAGCAACGGAACTTCAAATGGGTAGCGTTAATATGAGAAGAAGTGTTCAGAAGAAATTAGGGCTGCGGGATAATGACATAATGTTTTTATCGGATAAGCAGTATGATAATTTTATTGGCTACATGAAAAGCTTAGTTTGATATTATTAAATTATTGAGTGCGAATGTGAAGTGAACATGAATTTCCTGGGGGATTCGCACTTAAAATAGAGGTGAAACATTCAGAAAGAATGAATATTTAAGATTGTTTTGAGCCTTTGAAATTGAAAACTTAAAGAAAAAGCTTCTTTTTTAGTAAAATCATTACTAATTTGGTAATATTTTGCT # Right flank : TACAACAAAAAAATACATCAGCACAGATGTATTTTCTTTATGGTATGTCAAGCAGTGCATAAATCTTGGTGGTGCAAGTCCACTATGGGGCATGCATCGCAATCGTCAACCATTAGCCGTAAATGTGGCGGATATATGGGGAGAAGGATACATAACCTTATCTCGGGAGGTATTGTTAGTGAGAAGTAGAGATACTCTCGTAGTAACAATGAATGGCAAGAAGCATAGTAAGTAAGCCGAATGTTATAAAATACCCAGGCTTTAGTTTCTACAAGGACAACCAGACACAAAATTACAAAGTAAGACTATATGAAGTATTCATTGCAAAACCAAAAGAGAAACTGAAACAACGTACATTAAGAAGCTGTTGAGTATATGTTTATTAATGATAAAAACAGTTAATTACAGGAAGATAAATTATTGGTAAAATTAGGGGTAGAATTTCACAAAGTACAACCATGGGCATACTCAAGAAAGATTTACACAAGATGTGCAAATAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGTCGCAGGACTCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 3 98869-98294 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJKH01000006.1 Dielma fastidiosa strain JC118 Ga0244565_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 98868 33 100.0 34 ................................. TTGCCAAGTTAGACATTGATGCAGACGCAATGGG 98801 33 100.0 35 ................................. AAATATCATTTATCGCTCACCTCACTTCTTTCTAG 98733 33 100.0 35 ................................. AATAGCCGTATAAGCCTGCTTTTTATTTCTGTTTC 98665 33 97.0 34 .........T....................... AGCTAATTCTAACAAATCATCATCGGCTTGAAAT 98598 33 100.0 33 ................................. ATATGCCGTTTGAGTAGTTACGCATAACGGTGC 98532 33 100.0 35 ................................. TACTTCTTCGCCAAATGCCGGCAGCAGCACATTAG 98464 33 100.0 36 ................................. TTGCCACTTATTTATGAGCTTGATGACCGCGACGAG 98395 33 97.0 36 ....................T............ GACTTATTATGTAACAGCATCTTTGACTGAAACCAT 98326 33 78.8 0 ..........A.........T.......ATTTG | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.0 35 GTCGAGAGTCGCAGGACTCTCGTGGATTGAAAT # Left flank : CAATTCATATGCTTCAATCAAAGGGCGTACTCTATGCGCCAGGTAAGGCCAGCAATGCCGGCGGTGTTGCATGCTCAGGTTTAGAAATGTCACAAAATTCAATGCGTTACAGCTGGACCTTTGAAGAAGTTGATGATAAGCTTAAATCAATCATGACTTCAATCTTTAAGACAGTCGATGAGACAGCCCGTGAATTTGGCGCTGAAGGTAATTATGTTGCTGGTGCAAATATTGCTGGTTTCGTAAAGGTTGCAGAAGCCATGCAGGCACAAGGTATCGTATAATATTCAATATAAGACATGTGAAAGCATGTCTTTAAAAAAATCAATAAGTGCGAATGTGAAGTGAACATGAATTTCCTGGGGGATTCGCACTTAAAATAGAGATGAAACATTCAGAAAGAATGAATATTTAAGATTGTTTTGAGTCTTTGAAATTAAAAGCTTAAAGAAAAAGCTTCTTTTATAGTAAAATTATTACTAATTTGGTAATATTTTGCT # Right flank : AATCAAAAGTATAAAATAAAAACATCATCATTCAAAATAAAAATACATTCACCTTGATGTATTTTTATTTTCTATTATCTTCATTGACCAAAGTTCAAATATGCGAAAGTATGTGTTTATACAAGAAACCATTGACCTTCTTATATGTGAATCATATAATATGTAATATACATATAAAGGAGGTTAATTATGGATTTTTTATCCTATCATACAACGATTGAAACATTAAGCCGTCAAATCAATGAATCTCAGCAAGAATTATTAAATCCTTATCTGGGAAAATACAACCTGACTTTCCTACAATTTCAATTATTACGCCAAGTTCAGCAAGTTCGACAAATTACCGTGGGAAAGCTTGCTAAAGTCATGGCATTGGATGCTGGCAATGTATCCGCCTATTGTAAAAAATTAGAACAGAAGGCATTGCTGAAGAAGGTTCGCAGTATCAATGATGAGCGTGTCGTTCAGCTGGCCCTGACCGAGAAAAGTGCTGTTATCAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGTCGCAGGACTCTCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //