Array 1 125881-127960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCLS010000003.1 Streptococcus gordonii strain DFI.3.93 PGHFIBND_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 125881 32 100.0 34 ................................ AGAGTTGAAGCGCTTGGGCTTGAAAAAGCAAAGA 125947 32 100.0 34 ................................ ACGCTTGAACTTCGCAACAATCGGAGACGCTATT 126013 32 100.0 35 ................................ CCTAAACTAAATGAAACACTAATTGTTGAAACAGT 126080 32 100.0 34 ................................ AGATATTGATAATTATGAAAACGGTAACTTTATC 126146 32 100.0 34 ................................ TTATGAACCTTGGTATGATGACCGCAAGGACTAC 126212 32 100.0 36 ................................ ATGCTGAGTATGTAGATAGCATGGTTCAAGAGCTTT 126280 32 100.0 34 ................................ AAAGGAAAACATAGCTACAAAATTACAACCAAAC 126346 32 100.0 36 ................................ CTTTGACTGGCACGCCTTCGATCTCACCATAGACAA 126414 32 100.0 35 ................................ ATCATGGCTGATGTGTTATCCACAACTGCTTGGTT 126481 32 100.0 34 ................................ TTTTTCTTTATCCATAATCTCCACTCTACCTAAA 126547 32 100.0 34 ................................ TGTATCATTTTTAAAAATAAACCGATTGTGTTTT 126613 32 100.0 34 ................................ TCCTTTTTATAATTCAATGTCATATAGGCCAGGG 126679 32 100.0 36 ................................ TTTAAACGCATAAGCCGTGTAATGCTCTTTAAAAAA 126747 32 100.0 35 ................................ TAGAGAGGGCTACTATTTTTTTACTGACTGAGATT 126814 32 100.0 34 ................................ TCCTGCTTCCCCGGCAGTTCGGTAATTTTTAAGC 126880 32 100.0 34 ................................ CGTAAATTGTATCATTTTGTCGTTTGTAGGATAT 126946 32 100.0 32 ................................ TTGTCATTTATCAGTACGGCTACGGTTGCTGA 127010 32 100.0 35 ................................ TTGCGCGGTATTAATGCTGCAGGAGTTGAATTAGC 127077 32 100.0 35 ................................ AAGAGCTTCAACCATTGCTTGAATCATTTTCTTAG 127144 32 100.0 35 ................................ ACGGCTTTGTTGACTTTTTCGGTAATGATAGCGTC 127211 32 100.0 35 ................................ AAAACGAAGTTTTAGGCTCAGGATTTGACATTGAC 127278 32 100.0 35 ................................ ATTGCATGGTAGCGGATAATAAAGGCTTTTCCCTC 127345 32 100.0 34 ................................ TGAACTGACTGATTTTAAGCAGAAAGTGCAGACT 127411 32 100.0 34 ................................ CTTGCAAAAGAGCTACTAGATCGGCCTTCTTAGC 127477 32 100.0 33 ................................ TGTTACATTTAAAAACGGCGTCGTTCAGATGGA 127542 32 100.0 34 ................................ AGGTATTTGGAACGGTATCAGCTCAACTGCATCT 127608 32 100.0 36 ................................ CTTGGCCAAAACCAAGGCGGAGAAGCTGGGCCTAAT 127676 32 100.0 35 ................................ ACCAACTGTTTTTGCTTTTAGAAATCCTTTAAAAC 127743 32 100.0 33 ................................ TGTATCATTTCCAAGTGAAGCCATAAGAAAAGC 127808 32 87.5 23 ...........................TT.TA GGGCTTTGTTGCGTTGCCCTTGT Deletion [127863] 127863 32 100.0 34 ................................ TTCTGCCATAGTAGGCCTCCTGCATTTGATATTC 127929 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.6 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CCAAGACAATCCGTGGAGAATTGGAATCCTATCCACCATTTTTGATATAGGAGCTAGTTAATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGACTACGTCATGTGTCAAAATTATGTGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCTGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGCCTAGAAACAATTGGACGTGATACAAGTTATGATCCTGATATAGGCGTACTACTCCTTTAAATTACTTAGTGCGAATAGTGGTTACTCATAAAAAAGTAGGGCATTCGCGCGAAAAACAAACAAAAATAAGGTAAAAATTCAAAAATATAGAGGAGTTATCTCTCCTTGAAAAATAATTTTTACCTAAAACAGTGCAATTACGCGCT # Right flank : TTCAATGATTGATCGTGTAACTCGTCTATGCTATAAGGTAGCTTCCTTCATTTTGAAAATTTTCATGAACCCAAGATACTTATTTATTATTTATATAATATATTTAGTTGTTCTCTTTCATATCTATCCAAAAAAAAACCACCTATTAGGTGGTTTTTTTCAGTATCTATCACTGCTTACTAGAAGAACTTGAGCTGCTTGAGCTGTCGCTGCTGGATTCAGAACTGTCTTCTGAGGAGCTGGTGCTTTCAAATTGTTCTGGGTGAAGCGCTCGATAGCTTGGAGCATCAAAGAGATCAATAGTCGATTCGCCCTTGCGTTGGCTATAGAGACTGGTTGATTGGTCTCCTTTTTCTTCCTCGATTTTCTTCAATGCTTTGAAAGAGTGGTTGTAGGAGTATTTCTTGACATCTACCTTGCCCAAGTCATTACCCTTGTAGAAGCGAATCAAGTCACCGGTTTGAATAGCGTCACTAATCTTCAGCTGGGTATTGGCAGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //