Array 1 42897-43657 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPT01000010.1 Escherichia coli strain 1638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42897 29 100.0 32 ............................. GACATCAGAAAGTTTGAACAGGCGCTGAACTG 42958 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 43019 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 43080 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 43141 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43202 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 43263 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43324 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43385 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43446 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43507 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43568 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43629 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69346-71265 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPT01000010.1 Escherichia coli strain 1638, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69346 29 100.0 32 ............................. CGAAAATCCCGCAACCTGGTTATTACCGGCGG 69407 29 100.0 32 ............................. CCGCCAGTGCTGGAAGGTGTCAATCAGCACTA 69468 29 100.0 32 ............................. CCCGTCACTGACACGCAGTGGCGCTACCATGA 69529 29 100.0 32 ............................. TGAAATTATCATGCCAGCGCCATCTTGATGAT 69590 29 96.6 32 ............................A TCGAAAAGCTGGCGGTAAACAAAACGCGTGAA 69651 29 100.0 32 ............................. TCGCTTTTGGCTGTCTGGGCGAATTCCGGAAC 69712 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 69773 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 69834 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 69895 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 69956 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 70017 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 70078 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 70139 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 70200 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70261 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70322 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70383 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70444 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70505 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70566 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70627 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 70688 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70749 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70810 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70871 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70932 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70993 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 71054 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 71115 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71176 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71237 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //