Array 1 12275-13894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRL010000011.1 Streptococcus thermophilus strain Rico65 Contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12275 36 100.0 30 .................................... GTGAAATGCTTTTTCTAATTCATGTGGTCT 12341 36 100.0 30 .................................... TTAAGTGGTATTATTATATTATCGAAGAAG 12407 36 100.0 30 .................................... GCAACAGTAAAACGTTGCAAACGAAAACTT 12473 36 100.0 30 .................................... TTCCCGGCGTATATACTGGCTCGATTGTTT 12539 36 100.0 30 .................................... CAATAGTTACCCGAGTACCATCTTCAAGCA 12605 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 12671 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 12737 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 12803 36 100.0 30 .................................... TGTGACCAACTTCCACCAGCTTGGCCATTG 12869 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 12935 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 13001 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 13067 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 13133 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 13199 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 13265 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 13331 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 13397 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 13463 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 13529 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 13595 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 13661 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 13727 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 13793 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 13859 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGA # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //