Array 1 194798-195738 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASJ01000023.1 Caryophanon tenue strain DSM 14152 DSM_14152_R1_001_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 194798 29 100.0 38 ............................. CTTGAAAAACGCGCGACATGGCACTACCAAATAAAAAA 194865 29 100.0 36 ............................. GATTTTTAAATTTCGCACCACATACTACACATCTTT 194930 29 100.0 35 ............................. GCTTGTTGAAAATCATAGCCTTCTTAGTAAGTCAG 194994 29 100.0 35 ............................. TTTTGAAATGCTTGTAACAATCGCTTCAACTGATA 195058 29 100.0 38 ............................. ATCATATTTGCACCCGTACTTGCTGCTGCAACACCACC 195125 29 100.0 36 ............................. CTAAATAACGATGTAGGTGTATAGAAAATACCTCGG 195190 29 100.0 37 ............................. TGTCTACCATACCCACCGTGTTTGCGAGTGCTTTCAT 195256 29 100.0 34 ............................. GTAGCTGAAGCGAAACCAACGGTTGCGGCTGAAA 195319 29 100.0 37 ............................. TGTATAAAGGCGGCTGCATAATCATTCACCACGGGCA 195385 29 100.0 36 ............................. TTGCAACTGAAATTGACCCCGTGTTGTAGTTCATGA 195450 29 100.0 38 ............................. TTACAGCATTGGTGCTAATATCATGCAAGGGCTTTTTA 195517 29 100.0 35 ............................. TCGCGCTCCACACGCTCTTTTGTTAACCGACGCAT 195581 29 100.0 37 ............................. ACTGATTATTACGGGAAACCATTACGTGAGTATAGTG 195647 29 100.0 34 ............................. TGCAAGGTGTCATTAATACGATGGTGGCGCTAGA 195710 29 89.7 0 ..........G.T.....A.......... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.3 36 GTTTTATCTGAACTAAGAGGGATATAAAG # Left flank : TTTATCCGCTTAGAATGTTATAAGCTGATTAAACATGTAATCGGTGATGTATCGTATAAACCATTACAAGCTTGGTGGTGATTTGAATGTTTGTCATTATCACTTACGATGTGAATGTAAAGCGTGTAAATAAAGTGTGTAAAAAGTTAAAGGAATACTTAACATGGACGCAAAATTCAGTTTTTGAAGGTGAAATAACGAAAACACAGTTTATGAAATGTAAAAGTGAGTTAGAAAAAATTATTGATCCAGATGTAGATAGTTTGTATTACTACGTAGTGGAAAATCCGAAACATTTGAAAAAAACATTTGTAGGTGCAGAAAAAGGGGATATGGATATTTTCTTTTAAAATGCATTTTGGAAAGTTAACGTATTTATTGATAAAAGCTAGTGATATCAATGGATTCGGGCATGTTAATACAAATATCAAATTACATGATTAGACGTTTACTGCAAAACAGGTTGAATAAACGTTGTAAACAAAGGTTTTTTGCCAGGG # Right flank : GTGCAGAGATATATTCAAATTATGGAATAGAATGTCCAGTAGTTGACTGAGCGCACAAAAATTACACACTTTTGTATATTCTGTTCAATTTTAAACAGTTACTAATGAATTGCATATAGCTCCTTTACGCCATCAGTCATATAGTTATACATATAAAAATGTGGAGGGGTATTATGCAGAAGAAATTATTAGCTGTACCGTTTATCGTGATGCTTGTATTAGTACTTGTCTTTGTCAGTACGCAAATTCCGATGACGAAAATGGCACCAAAAGATATAGCAATAGGTTTTGTCGTTGCGGATGATGGACAGCTGGCTATGCTCATTCAAGAAAATGTACAAAAAGCAATGGCGAGTAATGATGCGCTTGATATTCAATTATTTGATTCACAACAAGATATGGAGCAAGCGTTACAGAATCGTGAGCTTTACGGGGGCATTGTTATACCTGAAAATTTTTCAGCGGCAGTGCAGAGTTTAGCGACACCAACGCCGATGCGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTAAGAGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 528861-529549 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASJ01000001.1 Caryophanon tenue strain DSM 14152 DSM_14152_R1_001_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 528861 33 100.0 34 ................................. CTTGTAGCCGACCATCACGCATGGGCACCACACC 528928 33 100.0 34 ................................. ACGCCAGTCGATTACCGTTGAAATCATGGACGGT 528995 33 100.0 34 ................................. CCAAATGGTAATTTGGGAATCTTATTTTTCATAA 529062 33 100.0 33 ................................. AACTTCTCGTAAACTTAGAATCAATTAAGTTAC 529128 33 97.0 33 .......................A......... AAACACGCCCGTCTTATGCAACTGTTCTGCTGT 529194 33 100.0 33 ................................. AAAGCCGTACATTGCAAAGTCAATTACTTCGTC 529260 33 93.9 33 ...........T.......A............. CGCATGTTGCGCTTGGCTTTGTCAAAGAACGTT 529326 33 97.0 33 ......................C.......... AATATAGATTCGCATACTTTTTCAGCCGTGTGG 529392 33 100.0 35 ................................. TACTACTGTTACTTCGATTGGTGACTGTACGTCAC 529460 33 97.0 24 ........................A........ TTGTGACTAAGAAATTATTCAGGC Deletion [529517] 529517 33 78.8 0 ..........AG.C..C.......A..G....A | ========== ====== ====== ====== ================================= =================================== ================== 11 33 96.7 33 GTCTCTCCATGCATATGGAGAGTGGATTGAAAT # Left flank : AGAACGATTCGCCAAGACTTAACGAAGTATCCACCATTTTTATGGAAGTAGTTGATAAGCATGTTGGTTTTAGTTACTTATGATGTTGCTGTTAGTAAGTTAGCTGGTCAGAAGCGATTGCGTCACGTTGCTAAAACATGTGAAAAATATGGTATTCGTGTGCAAAATTCTGTATTTGAATGCCAAGTAGATGCCACACAATATAAACAATTGCAATATGAGCTTCTTGCCATTATGAACGAAAAAGAAGATAGTATACGCTTTTATGAGCTAGGCAATAACTATAAAACAAAAGTGAAGCATTTTGGCATGAAAGAAACAATCAACGTAGACAATCCTTTAATTTTTTAGGTGCGGATGTAAAGTGAACATAAAAACCTTGGAGACCCGCACCGAAATTAATGTATGATTTACAAGAGATAATAGGTTATTTATATTTTAAGATAGGTTATTAGTCATTTTATAATGAAATTTATACGTCAATAGTCTCGATATTGGCA # Right flank : ATAATTGTAGGTATCCAATTGTGTTATCTGTAAGCACAAAATAAAAAAGCCAAGTACGATTGCGATTGCTGCAATATTGTACTTGACTTTTTTATATTTTTATGTTATTTGGAAAGCTTAATATTAAGTTTTTTAAATTGAATCGACTTATTTTAAACCTTGGCTATCTTTCCAGTCAAGGAACTCATCGTATGTTAATTGCTTATCTAAAATTGAACCGTCTTCGCGGATTTCAATTACGCGGTTAGCAATTGTTTGGATGAATTGGTGGTCATGAGATGTGAAAATCATGGCACCTTTGAAGCGGATTAAGCCTTCGTTTAGCGCTTGAATTGATTCAAGGTCTAAGTGGTTCGTTGGCTCATCTAATAAAATAACGTTAGAAGAAGATAACATCATTTTAGAAAGTAGGCAACGTACTTTCTCACCACCTGAAAGAACTGCAGGTGATTTTTTCACTTCTTCACCAGAGAATAACATACGGCCTAAGAAGCCACGTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCATGCATATGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 23791-23957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASJ01000008.1 Caryophanon tenue strain DSM 14152 DSM_14152_R1_001_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 23791 32 100.0 37 ................................ AGTTTTGCAAAAACATATCTTCTGCTTTTGCGCTCGG 23860 32 96.9 34 ........................G....... AATAATGACTGTTTCTAATTGCTCACGCGTAATA 23926 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 36 TTTGAATACACCCTGAATGAGGGGATTGAAAC # Left flank : AAAAGGTTTATACGACTACAATAACCCACGTAAGAAAGAGCTACTGTATACGCTCTATATTTATTTACTGAATAACCAGCGTTTAAAGGAAACGATGGAATACTTAAATTTATCAATTGGTGGTATTCAGTACCGTATTAAGCAAATTGAGGAACAGCTAGAAGATACATTGAAAAATGCTTCACTCGCTGCCTATGCATTATTATTAATCCAAGCGTTACTACTACTTGGTGAAGTGAAGTTTACGTAAAGAAGTGGAAGTTCAGCGAAGGCTGGACTTCCTTTTGTTTGAAAATTATGTTTATTTAATGGGGTGTCACACAATAATACGTTATAATAAGAAGAGCTAGTGCGGATGTGTAGTGCACAGAAAAACGCTAGAACACCCGCACCGACATTTTAGGCTACTTTTATGATAGTTGTGAGTTAAAAATCCTTATTTTTTGTTAAATAAATGGATATATAAGTGGTTATTTATGCATTTTTTAGGTAAAATGGCG # Right flank : CACAGAGCTATCTACTACAAGCCATCAAAAAAACGCTTATCCATAACGGATAAGCGTTTTTTATGTGCGAATCTTTTAGCTATTCCCTTCAGCTACTTCTAAATCCATTTTTGCTTCTTCAGCAGCGCGTTGTGCATCTGCTTTTTCTGTTGCGGTAATTTTTAACTTACGTGTCGCGACTAATACAATCGCTGTGAATAAGTATAGACCCACAACAACTAATACACCTGAGTTAAAGCCAGAGCGTACATCTTCACCTGCAAGAGTGATTAAGTAACCTGTTACCCAAGGACCGATAACGCCAGCCATACTTGAAATTGATAATGAAATCCCTGTTACACTACCAACTAAGTTTTTTGGAATAATCATCGTTTTGATTGCAGCATTTAATGGCAGTAAGCTTGTGTTCATAATTAAGCCGACACCTAAAAATAATGATGCTAAAATTGGTGAGTCAACGAATGTTGTCATTGCAAATGCAGCGGCACCAACTAAAAATA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTGAATACACCCTGAATGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 6647-4194 **** Predicted by CRISPRDetect 2.4 *** >NZ_MASJ01000009.1 Caryophanon tenue strain DSM 14152 DSM_14152_R1_001_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6646 30 100.0 36 .............................. AAAAACTTGCCAACTGTGTCTGCATTAAGGTGTGAT 6580 30 100.0 35 .............................. TCTAATTCCGGATCTAAAATCGGAAACTTATTAAT 6515 30 100.0 36 .............................. TGGGATTAATCCACCGCAGCTTATGGTGTTAAAAGC 6449 30 100.0 35 .............................. GGAATGATTGGGACATAGCGGAATATTACAAGGAC 6384 30 100.0 36 .............................. ATGGAAAACGAAAGAGGATTGAACGTGCTGCGAAAG 6318 30 100.0 35 .............................. ATTTGTATGTAAGCCGTTTGTCGATAAGCATTACG 6253 30 100.0 39 .............................. TATTTAATTTGACTTAAAAAGTTAAACCGAGACGCCAAT 6184 30 100.0 34 .............................. ATGTTCGTGCTACAGAAGCAATTGCAGAGTTACA 6120 30 100.0 33 .............................. ACGTCTACAACGTCCGTTAACGTGCCGTGCGAG 6057 30 100.0 36 .............................. TTTAAAAATCACGCTACTAACACCACTTTGGCGTAC 5991 30 100.0 35 .............................. ATAATCCGAACGCCCTCCACTGAAAACACATCATA 5926 30 100.0 36 .............................. TTGTTTGTGTTAGTAGCGTCTTTTTGTTTCACACTC 5860 30 100.0 34 .............................. ATACGGAGAGGGTGAACCGCATGACGTACTTTAA 5796 30 100.0 36 .............................. ATCGGTGTACAAACATACGACCAACTTTTAAACGGC 5730 30 100.0 37 .............................. ATATATAGCGCGTTTTCTTGTTGCTCGACACGGGTTA 5663 30 100.0 36 .............................. GAAAAGAGGAAAAATACATGACTACCTTTGAACAAA 5597 30 100.0 36 .............................. TTGTGCATAGTGGTGATACAAACGCAGAAGTTGTTG 5531 30 100.0 35 .............................. GTAAACGGAATACGTTTGCATCGTCTGCCGCTTGT 5466 30 100.0 35 .............................. AAGCAAGAAAATGACAGTCTGTATATTGGACGAAA 5401 30 100.0 35 .............................. TTGTTAATTGACATTTCTTCATATTCTGTGCCTTT 5336 30 100.0 36 .............................. CTCGCACTCGTATTACGGTCTAGCGATACCGTACCA 5270 30 100.0 35 .............................. GTATCTGCGTTTGTTCGCCCGTTTACAGTATCGCC 5205 30 100.0 34 .............................. TATTATTATGACAATGAAATTAAAAGGCGCTTTA 5141 30 100.0 36 .............................. TACACATTGCTGGCAAATAATAAACCTTGTTCTGCG 5075 30 100.0 36 .............................. ACATTTCCGTCAAAATGACTTCCATTTAGCACACCC 5009 30 100.0 36 .............................. ATTTGTGTTTTTAAGTTTGTCGCATATTCAAGCGCA 4943 30 100.0 36 .............................. TACCCGAGTTCCATGAAGGTTTTCCTTTCTCAAAAT 4877 30 100.0 36 .............................. AAACAAGGGTATACGGGTGCGATTGCTGACAATGAA 4811 30 100.0 36 .............................. CTGTCTTTTGTGAGACGTTCGTTTTCGGATGTTGCA 4745 30 100.0 35 .............................. TCGTTTAAAAAGATAATATGCCCATGTTGTAACTT 4680 30 100.0 35 .............................. CACCATTGCCAGCACTTACTTTTTGGGCGTTTTCG 4615 30 100.0 35 .............................. TACCAAACGATGGATGTTCCAAACGATGCAAAAGT 4550 30 100.0 37 .............................. ATGTCTTTTGTAAGACGTTCGTTTTCTGTTGTCGCAC 4483 30 100.0 35 .............................. TTCCAAACTGAAAAACGAGAAATTGAATATTACGG 4418 30 100.0 35 .............................. ATACTGCGGTCATGCGCTTTCTTTGATTTGGTTAA 4353 30 100.0 34 .............................. ATAAAGCCACTCCAGCTAAACGATGGTAGTGACG 4289 30 100.0 36 .............................. GCCCACTTGTACAGCTCAAAAGCGTTAATGCTGTAA 4223 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 100.0 36 ATTGAACTTCAACATAAGATGTATTGAAAT # Left flank : GTAAAGAGTTTATTCCTTTCTCAATTAAGGAGAAGAAATAGATGAGCCGAAAATTTAATGCGAATTATGCTTTTGTTTTTTATGATATAAATGAAAAACGTGTCAATAAGGTGTTTAAAGTATGCAAAAAGTATTTAGAGCATTATCAGTATTCTGTGTTTAGAGGACCGATTACACCGTCTAACATTAGAGCATTAAAAAATGAGATACAGAATATCATTAATCCAGAGGAAGACCGCGTATCATTTATTTTAATGATGAATGATAAAGCTTTTGGAGAAATAGAGTTAGGTCGAAAAAAAGCCGATGACGATTTGTTTTTATAATTTTACCAGGGATTAAAAAGCCCAAATTTTATAAAGCTTTATGCATCCATAGTTATGACGTTTTTTTAAGAATAGAAACATTCTGCTCATTTAGCTGGTAAAAAACGTTTGAACCCCTTGGTATTATTGATTTATAATGTTTCTATAATATACTGAAAGCCTTTAGTGCTCGGT # Right flank : AGAATTAGAGCGTTAAGTATTGAGATAGTGGCTAGATAGCTAGCCTATTTTGGTTTAATGAACAAACGTAATCATATGGTCAATCGCTAAACATAGCAGATGATTTACTCACCAAAATGCTGTACTTACAAACAAAATGAAAGGAGCGTTGATGTGATGAAAAAAAGTGTATACAGTGCGAGCGTGATGCTAGCATTATGCTTCGTATTATCCGCATGTGATAACGATACAGATGCGATAATACATACGGACATGAAAGAAGACACTGTCGTAGAAGAAGTGACACGTACAGCGCCACAAATGATAGCAGATGATGAATATGTGAAAGCAACCATTGTTGACATCATAAAAGATAGCGAGCGCGCGGTGTATAACGTTGTCTTTGAAGTGGAAAATCGACTGAATAATGACATCGATGTTGGCTATACAGAGATACTAGGTGACGGACAAAGTTTGACATCGTCCATATCGGCTACGCGTATACCATCAGGCGCAACAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTCAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //