Array 1 1055065-1052108 **** Predicted by CRISPRDetect 2.4 *** >NC_002932.3 Chlorobaculum tepidum TLS, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 1055064 32 100.0 33 ................................ TTGAAAATCTGGTAAATGTAAAGACATATTAGG 1054999 32 100.0 34 ................................ GGTATCTCAGAGACAACCCTGCGGGCGATCGAGA 1054933 32 100.0 34 ................................ AGCCGCACCGGGTATCGCTTGCCTTCCGCGAAGT 1054867 32 100.0 35 ................................ TGCGCCAAGTGCCAAATATCCAGCGGTTGCGCATA 1054800 32 100.0 35 ................................ GCTCGGGTCGTAGCTCATGACCCATCCGGAGCGCC 1054733 32 100.0 33 ................................ TGTATTGTACGAAATAGGTCAATTTGATCAATC 1054668 32 100.0 34 ................................ TTGATGGCTTCAACAATTTGGTCTTCAGTCGCTT 1054602 32 100.0 36 ................................ GGGATCTCAGAGACAACCCTGCGGGCGATCGAAAGG 1054534 32 100.0 35 ................................ TGGCCATGATCGACGCAGGGCTTGTCAATAATGAC 1054467 32 100.0 35 ................................ TCCATGAAATGGTTCACAGCACGGGAGCGGAGCAT 1054400 32 100.0 35 ................................ ATCGCGTTATGATGCCGGTGTTGCGTCGTACAGGT 1054333 32 100.0 36 ................................ GAGGCCCGAAGTACCGTTGGGGCGACCCTGTCAATG 1054265 32 100.0 34 ................................ TGGTCTCCGTCGCTCAAGGGACACATGGAGCGGT 1054199 32 100.0 33 ................................ TCGACCAGCGTGTCCGCGCGCTCTCCGGCCTGA 1054134 32 100.0 34 ................................ TGATAAGTTAAGTTAATGGATGAGATTTATTTCT 1054068 32 100.0 35 ................................ TTCGGCCGCTGGCGTCTCTTGCTGATCGCCCTCTT 1054001 32 100.0 35 ................................ TCGGCGCTTGGAACGCCGTTGATAAACGTAGTCGG 1053934 32 100.0 34 ................................ AGCTCTTGGAGTACCGCCTTAACAAATCGAACCT 1053868 32 100.0 33 ................................ TTGTAAAGTTACGCGGATCGCAATTGCGTTTAG 1053803 32 100.0 37 ................................ TTTGTTTGTCTGATACTATCGTCATAGCAGTACAGGC 1053734 32 100.0 32 ................................ GAACAAGATGCTCGAGGTGGCACTAGATATGT 1053670 32 100.0 33 ................................ TTGTGATTGATATTGTTGTGCTAACATTGGCAA 1053605 32 100.0 34 ................................ CGGATGACCCAATCGGGACAAGCGCCCAGCTCTA 1053539 32 100.0 34 ................................ GAACAGATCAGCGTCACTCATGAGGGCGCCGCGG 1053473 32 100.0 34 ................................ TGGGGCGGCGACGATCAGCTGCTACGACCTACCG 1053407 32 100.0 34 ................................ TCGTTCTCCACCCGCTCTTTATATCCGGATCGGC 1053341 32 100.0 33 ................................ ATCGACGACATCGAGCGGCTCAAGGATACCGAC 1053276 32 100.0 37 ................................ CAAATCCAGAAATTGTTTGAGCAAGATGCTCGAGGTG 1053207 32 100.0 33 ................................ TGAATCTCTTGAGCAGCTTTGGCCACTTGGTAT 1053142 32 100.0 33 ................................ AACGCGAGCAAGGGGCAAGAGCTGGGCGTCAAG 1053077 32 100.0 34 ................................ GACCATACCGGGACGAGGCGATCGGGAGACATCA 1053011 32 100.0 34 ................................ GTAGAGACCTTGCTGCGACTTCATATACTCCTCG 1052945 32 96.9 34 ...........T.................... TCATAACTCTTGCTGAGATACTGGAAGGGACCGC 1052879 32 100.0 33 ................................ GCTTTATACTCTCGATGATCGCCTGGCAAAGTA 1052814 32 100.0 36 ................................ TCCGAGCATCTTCGCCACTGATGTACGGCAAAGCAG 1052746 32 100.0 33 ................................ AACCTGTGCGGCGCTCCCGTGCTGTGAACCATT 1052681 32 100.0 35 ................................ GCCCGTCGTAGGACGTGAGTGCTCGACCCATTCAA 1052614 32 100.0 36 ................................ GACCGCACATCAACGTGAAGTTGCTGACCTTAAAGC 1052546 32 100.0 40 ................................ GAAACATTGCAAAAGCCGGACAAAAGACACAAAAGCATAA 1052474 32 100.0 37 ................................ GGCGGGCGATGTTTAACGCCTCGCATAACCACATAAT 1052405 32 100.0 33 ................................ GTAATAGGCTGATCGGAAGTCCTCATAACGCAT 1052340 32 100.0 34 ................................ AGCTCTTGGAGTACCGCCCTCACAAAGCGAGCCT 1052274 32 100.0 37 ................................ GGCGGGCGATGTTTAACGCCTCGCATAACCACATAAT 1052205 32 100.0 34 ................................ CGTCTATCTATTAGACTTTTAATCATCTATCATC 1052139 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================== ================== 45 32 99.9 34 GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Left flank : CATGTATCCGCCATTTGTCTGGAGATAGCTCATGCTGGTTCTTGTTACCTATGATGTGAACACCGAAACACCTGCGGGCCGGAGACGACTGCGCAGAATCGCCAAGACCTGCCAGAATTACGGCCAGCGCGTGCAGTTTTCCGTGTTTGAATGCAACGTCGATCCGGCCCAGTGGGTTAAATTGAGGTCGAAACTGCTCAATGAGATGGACCCGAAACTCGATAGCTTGCGGTTTTACTTTCTCGGCTCGAACTGGCAGGGCAGGGTAGAGCACGAAGGCGCAAAAGAGCCTCGTGATCTCGAAGGAACGCTGATTTTATAAATCGCGAACCTGAAGCTGTACCAGAAGTGCCTGCTGGTTCGCGTCCGAAACAAGTTGTTTTTTTGTATGCAGATATTGATTGTATCGTCAGATTCGCGTAAGATGTTGTTTGGCATACGAAGCGGTTCGCGGAAACTCATCTGCGAAGCCGTAGAGTATCTGGCGATACAGCCAAACA # Right flank : GGCACCGATCAATGACAGGATGTCTTTTTTTCATATCTATGGAGATGGAGCTTTTGTTGTAGAAAGAGAGCGTTTGATTTGATTGTGAATCAGATATATTTTTTGAACGAAAACAGGGAGTGAAATGGGGAAGAGGTATGAGATAGGCGCTGATTTTTTTCGTGAAGAAATATTGGCGGCTATGTTGTTTGGATTCCGCAACGTCAAGAATCCGTCAACCGTGACCGTTCATCCGGAACTCATGGTGAAGATAAGGGAAAGTTTCATGGATAAGGTGACATCGCCGAAGCAATTGGGCGATGTGGAAGTGTTTTTCGGGCTGACGGTCATTGAAGATGCGACAAAAGCAAAGGATTACATCTCAGTCAATTAAACCCTGAAAAAACAACAGCTCAGGCTCGGCGAAAAATTGTCCGGCAAGCAGACGTGCACCGCGCGGGATGGCGGCACCGTCTTGCCAGTTCGTCTTACTTTTTGATGTAGGCGTTCAGACCGATCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1877311-1878450 **** Predicted by CRISPRDetect 2.4 *** >NC_002932.3 Chlorobaculum tepidum TLS, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 1877311 28 100.0 34 ............................ CACCGAAACCGCGCAATTGCTGTACGCATGGGAC 1877373 28 100.0 33 ............................ TTTCTACCCATTACCAACACAAGGGGCGCGCGT 1877434 28 100.0 36 ............................ CAACAACAACCAAAAAACTCAAAACTTACGGAGTCC 1877498 28 100.0 33 ............................ CATGCGACGCCTTTTGTCTAACTTGACAACGAT 1877559 28 100.0 34 ............................ TCACGCGATTGCGGCGTTCGCGCTGATCAAAAAG 1877621 28 100.0 34 ............................ CCATGTTATCATTTCAGAAACAAGAAAAGAATGA 1877683 28 100.0 34 ............................ TGGGATAACCGTATAGGAAGCGTAGCAGTGCAGG 1877745 28 100.0 33 ............................ CCTTGATTGCCCGCGCCGTTATGGGCGGCGGGC 1877806 28 100.0 33 ............................ CAAGGAACAATTTGAAATTCTCACGCAAGGAAC 1877867 28 100.0 35 ............................ CACTACAATATCATAAAGCAAGGCGTCTCCGCATG 1877930 28 100.0 33 ............................ CTCTTGGGGGATCGAGGGCCTTCAATTTGCCGG 1877991 28 100.0 35 ............................ TCACGCGCTGGCGGCAAAGGCGTTAATTGAACGCT 1878054 28 100.0 33 ............................ TAAAAAAGTGCTTGCTTTTTGGAAAAAATGAAT 1878115 28 100.0 33 ............................ TGGTGTATAGCATCTAATCCAGTAATCTTTTTA 1878176 28 100.0 33 ............................ TGTCAGGACATATCACTTAGAGCTTATGAGCGA 1878237 28 100.0 33 ............................ CAAGTATATGGCTCACTTCCCGGATAATTACGG 1878298 28 100.0 34 ............................ CAAAAACCGGAGACCAACCATGAAACAGGAACAG 1878360 28 100.0 35 ............................ CGCCTCGGGTCGCCGGGGCGTTGTCTTTGACCCGT 1878423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 19 28 100.0 34 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GCAGGTCTCGATCGACCTGGCCTTTTCGCTGACCGCCGACATGGCCGGGTATTACGACCGGCACAAGATCGCCTCGGAGTTCCGGAAGCGCGTCATCGAAATCGACCTGCTTGGCAAGATCGGGCCGGACATCGAAACCATTCTGGGGAAAAAACAATGCTCGTCGTAGTCGCCAATGATCTGCCCCCGGCCGTGCGTGGCCGGATGAAGCTCTGGTTCATCGAACCACGGGCGAACGTTTTCGTCTCTGGTGTGCGGGACAGCCTGGCCAGAAAGGTGGTGGATTATCTGCACCAGCACTGCCCGCCGAAAAGCGGCCTGATGATTTTCAACAGCTCGAACACGTGCCCCGGCTACGAAATTTTCGGTTTGGGCGACACGCGCAAAGAGATCACGGAAATATCGGGCCTGCCGCTCGTGATCGAAAAATCCGCCGCCTCGCCACCAGAAAACCAAAACAGATTGACGCCAGAGGCCCCGAAAGTCCAGTAAAACCCAGT # Right flank : CCTTGTCCAGCCCGGATGGGGTTGCTTCGTTTGCGTAAAAAAAGGCGACCTCGCAAATCGAAATCGCCCCTGCAAAAACAGCAAACCCTGCCGCGCAATCACAACCTTGTGCCTATTCCAAGCAGGTCGGCGATGTTGGCTTTGGGGTCTATGACCGGGCGGATGCCGCGAGTGGCGCAGGTCATAATGGTGGTAACGCCGGGACCGTGGCCCGCTTCGCGGCAGTCGCTGTGCACCACGACGCCGATGGTGACGGCCCCCTTGCGGTAGGCTCGCCCGTAGCGATTGTCCTGGTCGAGCAGCGCCACGAAGTCGCCGAAGCGGATACGGTCGAGGCCAAACTCTTCGACCGCACCAGGATCGCTGGTCACGATGTCGTAATCGCCCTTGGCCACGTGCGCCGAACCGATACCGGAACCCATGCAGTACGCCGGGACCAGTGTCGTTACCGGCACTTCGAGCACACCGTCCTCGGCAATATTGATCTTCATTTTCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //