Array 1 4671-4457 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000021.1 Nocardia terpenica strain N-35 NODE_25_length_84611_cov_35.660669, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4670 29 100.0 33 ............................. GCCGGTTGAAGATCACCAGGCGGGTTCCCTCCA 4608 29 100.0 32 ............................. CGGTGCTGGGCGGCGGCGCGGTCGATGGCATC 4547 29 89.7 33 ..............T............TT GGTTCGTACTGGGGTTCCCATCTGGATCAGCTT 4485 29 89.7 0 ............T...T..........A. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.8 33 GTGCTCCCCGCACGCGCGGGGATGAGCCC # Left flank : CGTGCTGACCGAGCCGACGGTCTCTGTCAAGGACGCGGCCCGAGCCCTCGGCGTCGGTCGGTCCACCCTCTACGCCGCAGTGAAATCAGGCGAGGTACCAGCCATCCGAGTTCGCAACCGGTTACGAATCCCGTCGAACTGGGTGTGCCACATGCTGTATCTCGACGCTGACCCGGGCGGCGGCGCGCCGGAACGATCTCATGGGTAACTTTCGCTGCGGGTTCTGTCTCGATAGGAACCCGCAGGGAGCGCCGAAGTCCCGGGAGCAGTTACGATTCCAGGTCGCCGATGATTGCGGCCCTGGTGCGTCGAGGGATGTCGGCGTGACGCCGACCTTCGAACATCAGGGGCGATGGTAGCCAGGGCAATCCTTCGCGATCAGCTTGTGGTCTCGCAGGAAGCGGCAGGCTACCGTCAAGCGGGCGGGCGAACAGGTTGGAGAGCGATCGAAAGTGAATGAAATTCCGGCCAACCGCCGTGATCGTCGCAGGTCGGCAAGA # Right flank : CGTGGGCCACCGCATAACCGGCGGTATCGTCGTGCCCCTACACGCGCTGGCGCGAGGATGAGGCGTTCGAGATTCGGAAGCTGCGGTCGCTGCTACATCATCTGACGGAGTCCCGGCCATCTCGATATTCGTTGTAGAAGTTCAACGATGGGAGGGTCAGGACGCCACCTCGGTAGCTGGTGAGGATGTTGGTCAGATCTGCTTTGGCGGTTCCGTCGTTGGTTTCGCCTGAGTCGACGACCGCCACGATGTCCTTGAGGTGGTTGTCGGGTCCGAAAAGGTAGTTGTAGCGGGGGTTGTGCTCGATGGTGCCGTCGTGGTTCTGGAGGGCTTTGACTAGGTCGAGGTCTGGTTGGTAGAAGCCGGTTAGGGAGTAGTTGATGTAGGGCTGTTCGTGTTTGGTGGTGTCGGTGGGGGGAGAGTCGCCGAATTTGTCGTGGGTCCGGTCGTCGGCTTCGGTGGTGAGGGCGCGGTCGAGGATGTGGCGGAGGATGCCGTAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8283-9135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000010.1 Nocardia terpenica strain N-35 NODE_10_length_311318_cov_35.226231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 8283 29 100.0 32 ............................. AACGATCGCGCCTCCGGGCGAACGCTGCTGGG 8344 29 100.0 32 ............................. CAGTTCAACATCCGCTGGGAAGAGCACTCCCA 8405 29 100.0 32 ............................. AGCCATGCGATCCAGGTGACGGCGCGGATGGC 8466 29 89.7 10 .....................G..CT... CGCACGCGCG Deletion [8505] 8487 29 96.6 26 .....................G....... AGGCCGGTGTCGGGCTGGGCGATGGC 8548 29 93.1 32 T....................G....... AGGCCGGTGTCGGGCTGGGCGATGGCTTCGCG 8609 29 96.6 32 ...............A............. ACGCAAATGGCCCACACGATCAACCGGAACGC 8670 29 100.0 32 ............................. AGTTCGGCCTCGTACTCGATCTGCTAGTCGTA 8731 29 96.6 32 .........................A... GGTGTGGCGCGCCTTACCTGCCGATGCAACTC 8792 27 89.7 32 ...........--............A... TATTGGCGCACAACCGGCGTCGGCGGCCACAA 8851 27 93.1 32 ................--........... CATGCTGCGGAAGCACACAACGCGAATCCGCC 8910 29 93.1 31 ..........T.T................ GCCGAAATATCTGGCGGCGGACAGTCTTCCG 8970 29 75.9 50 ........T......A....A...GCT.T TTGCGCGGGGATGAGCCCCTGCGAGCCTTCGCAGGCCGCCGCTGGCAGCA 9049 27 89.7 31 ................--..........G AGCAGTACTTCACCGACCTGCAGGCGATGCT 9107 29 82.8 0 ............TT.AT.......T.... | ========== ====== ====== ====== ============================= ================================================== ================== 15 29 93.1 31 GTGCTCCCCGCACGCGCGGGGATGAGCCC # Left flank : TCACCATGTCGGCAGCCGACTGGTCGGCCTTCCTTGGTGCAGCAACCGCAGGCATCCACATAACGCAGCACGATCTCCCTACCATTGAGCGCGCCGACACCGGCGAAGTAAGCCTGCGCGCGGCGGACGGGACGGTCCTCACCTACACCGCCGCCGAGTGGCTCGCCTTCACCTCGGGCGTGCGAGACGGAGAGTTCGCTGCCGCCTGACCGGAAAGCTGTTGGCCTGTAGGGAGTCTGGGAAGTCGTGGCCAGGTCTTGGAATAATGGCTACGACTTGGCCAGAGTTGGCCGTAATTTTGAGATTCGTCCTTGAGCTGTGGCGTTGGCCGTGCTGAGACCGGGCGGAGGTTCGTTTCTGCCGCTCGGCTGCTGGTAGCCGAGCGTCACCGAAATGGTTTGGGGCGGACGACCGCTAGGAGGACCAGGAGAGATGTTGGGAGGCAATTGAAACTGAATGAAATTCGGGCTGACTGCGGTCATCGGTGCTGGTCAGGAAGT # Right flank : CCGCCGAAATGTCCGGCGGCGGACAGTCTTCCGGCGTTCCCCATACGCATTGGAATGGCTCTTCATGCAGGGATGCAGCGGCCCTACTGCTGAGTGCTCCCCCGTGTGCGCGGGGAAATGCGTGAGATCTATCGCTGCGGCCGAGGTGCTCCTTGCTTGTGCCGGGATGGGTTATGAAGGGTTGGCCGCGCATGGTCTGTTGGTGTGCGTAGGACTGGACGGTCGTGTCCATTGGTTGGTTGTAGTGTCGAGTGTTGCTGGCGTGTCGGTGATTTGGGGTGCACTTGCCAGTTCGTGAGTGTGTGTCGGTGGGGCGTTGTACTCTGCTGCCGTCCTGAGCTGTTCGGCGGTCATGTCGTGTTTGGGGGTCTTGCTTGTTGTCGGATGCGACGTTGTCGGCGTGGGCGAAGAGTGACCGTGACGGTGGGAGTTTGTCGCTGGTGCGGCATCTTGCTGATTCGGTGGCGGTGGCTGGGTTGGTGTGGGATCGGTGGTTGCCG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.18, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCCGCGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18470-18679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000010.1 Nocardia terpenica strain N-35 NODE_10_length_311318_cov_35.226231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18470 28 100.0 33 ............................ CATCCCACCAGCGCGAACTACCGATGTGTTCCG 18531 28 100.0 33 ............................ CGCTGCTGGCTGTGCGAGGAACGGCGCACCTGC 18592 28 96.4 33 ..........T................. CCTGCGCGACACGGTGGTGACGGAGGTTGCCGG 18653 27 85.7 0 ........T...T....-.......T.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCTGGGACACCGACGTCGTCGAGCTGTGGGACCGCAAAGGCAATGTCGCCGCAGGCATCTCCTACGACGACGAGGAATTGCCGTGGTAGTAATCGTCCTCACCGCGTGCCCGGCAGGACTACGCGGACACCTGACCCGGTGGCTACTCGAAATCAGTCCCGGTGTCTACGTCGGCATCCTCACCACACGCGTCCGGGAACTGGCCTGGCAGCGAGTTGTGGACCTGTCCCGTGACGGCCGCGCGATCATGATCTACTCCACCCGCTCGGAACAGCGCCTCGCGTTCAAGGTCCACTGCCATGACTGGGAACCGGTCGACATCGACGGCATCCACTTGATGCGCCGCCCTCACACCGCCGACCGCGCGCTCGGCGGGGCGCGACCGGGCTGGAGCAAAGCGAGCCGATACCGCAAAGCCGCGCGACAGCCAAACAGTCGCTCTACGACTGAAAGTGAATGAAATTCCGGACTTTGGCCACGAACACCGCAGGTCAGCAAGT # Right flank : CTAATGACGAGATTTTATTCTCGGACCGTTGGCGGAAACGTTGCGACGGTAGCCGATTTAGGTAAGCATGTCGGGGGCTTACGCGCGTTGGCACTCTCGTTGCTGTGGTGATCTCAAGGCATCTCCGCTCGTATCTAATGGCGGCTGTCTGCTTTTGATGTTGGCTGGGTCGACACGTTGGTGTCCGTCTCCGATGCGCGTGGGACGGTTCGCATTCGGGCCCTGGGGCTGGCTGGTTGTCTGGCTTACAGTTCGAGTGTGGTGCCGGGGTTGAGTATCTCGATCGTAGTGTCGACTTCGGGAGTGTCGAACGTGTCGGCGTGGTGTGCTTGGGAACGTAGCTGGTCTTCGTGTGTTTGTTGTTGGGTGGTGAGGTGTGTTCGGCGGTGTTGTTCGGCACGCAGGGTGTCGAGTTGGTGTTGGAAGTATTCGGTCAGGTCGTCTGGTGGGGTGGGGTCGTAGTGACGGACGCCGTCGGTGTATGTCGGGGCGGGGCCGAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 427763-427431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000005.1 Nocardia terpenica strain N-35 NODE_5_length_474026_cov_37.646484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 427762 28 96.4 33 ..............T............. GTCCGGGTACACCTCCATGTCGGCGAGGATCCG 427701 28 100.0 33 ............................ GCCGCGGATGGTGTTCTGGCCCGCCGCGCTGCG 427640 28 100.0 33 ............................ GAGTTCGTGACGGCCTACGGCGACCGGTCGGAG 427579 28 96.4 33 .................T.......... GCTGGGCGAGCTGTCGGCGCAGTTCCAGGACCG 427518 28 100.0 33 ............................ CCGCCCGACCGCATGCCCGCGCTCGGCATGGTG 427457 27 85.7 0 ....................A.C-...T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCTTCCCCACGCACGTGGGGGTGCACC # Left flank : GTCGCACTCGCCCACCACCTCGCCATCCCCCTCATCCCGATCGCCGCCTCCGGCGGCACCGCCGAACAGACCTGGCGCGACATCCGCACCGACATCGTCGGAACGCCTCTCGCCGCCGACTTCGACAACCTCTGCAGTCCCGACCCGACGATCGTCATCGACGCCGCGGTACGGCTTCTTGCCCGCTATCTCGATCTACCGCACTAAGTGCCTATGAACCTGACTGCACCACAACCAACGTCAGAGTATCGGTGCCCACAATGTGCGAGTTCGCATAACCGCGTCGCCGCGAACGCTGTCGTAGCGGATGCACCGACGGTGCACATTCAGCCCGACCGAGATCATGCCGGACTGTGTCCGGATAGCATGGCTGAACCGTGAGGGCCCAGCCAGAATTCGCCCGGCACCGCCCACGATTTATCAGCAAAGCCGCACTGTCATATACGGTCACAGATGACCAACGGAGGCCCTACGCCCGACAAAACTGCTGTTCGGAAAGT # Right flank : GTTGACAGCGAACCGAGAAACCCTCTGCGGCGGCAGGTTCTCCGCGCCTGGCGAAGAGCACGGCTGAGTGTGGTTGTGCCTCGATCGGATCAGATATTTGAGTTCTTCGCGACTCGACTCGCTGGTGTCGGAGCCTGATTAGAAGTCGGCGTCTATGTCGTCGGTTTCCGGCTCTTCCAGCGGTAGGAACCGAACCAGTTGCAGCCCGTCGAAGTCGGCGACGCGGCGGTGGCGTTCTCCAGCGGTCTTGATGCTGAAGCCCTGTTCGTTGGAGGCGGGGTGGATGCAGACGGCTTCGCCGCCGCCGACGGAGTCTGCGACAGCATCCCATAGCTCGTCTCGGACCTTGGCGGACACCGTGCCGACGTAAAGTCCAGCGGTCGGTTCGATCAGCCAGCGCGACAGCGCGCCCCGGACGTGGTCGGGAACCACGGTTGTGGAGATGACGAGGATGTTCGCCATCAGAACTCCGGGTCGAGGTCGCTGCCGTAGTTGACGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35334-34783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000008.1 Nocardia terpenica strain N-35 NODE_8_length_356613_cov_38.121427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 35333 37 100.0 35 ..................................... GGGAAAACCGGTGCTTCATGCTCTCCGCCGACGTG 35261 37 100.0 37 ..................................... CCCCACTGCTGGCCTGGCCGCGACGATGATGAGCTGG 35187 37 97.3 38 .......................T............. TACGACGCCGCGAACAGGTTGCACACCGCGGGATCGAA 35112 37 97.3 36 ...............T..................... GTCCTGCTTGAGTTTCCTCGGCTGCCGAACACGAAG 35039 37 94.6 37 ....T.......T........................ CAGCAGGTGGTCGCCAATGCCTATACCGACACGCAGC 34965 37 94.6 36 ...................AC................ AACCTCGGCAACGTCGTGGGCGGCACCTGCAAGGCG 34892 36 97.3 37 ...................-................. ACGAAAACCCTGAGCTAGGGAGCGCACGCCATGCAGA 34819 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.3 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : CTTCTTCCCTCAGTCCAAGCACGACTCCTCGCCCGGCACCTGCGCGGAGAACTACCCACCTACCTGCCCTGGACGCTATAGATGGAACTCCTGGTCACCTACGACGTCTGCACCGCGACTCCTGAAGGGAAACGAAGGCTCCAGCATGTCGCGAAACTTTGCGAGGGCTACGGATTACGTGTCCAGAAATCCGTTTTCGAGATCGTCTGCACGGACGCTGAACTTCTCACCCTGACCGACAGCATCCACCGAATGATAGAGAACACCGAGGACAGCATCAGAATCTACCAAGTGCCCACAGGCTCGTTCAAGACCGTCCGCACCATTGGAACAGCCGAGCTATTGCCGCACCACGACCCGTTGATCCTCTAGTTCGGAACCGCCGATGCACATGAATTCCTAGAGAGGTTCACAACTGTCGAGCACCGTTTTGGTTGTAGGACCTCTCGAAAGAGGAGCTGATTGCATGGCCGAGATGGGATCAGTGCAGGTCGCGCACC # Right flank : CCTGCCAGGGCGCGCGGGGTGTAGAAGGGTTCGCAGGTGGCGGTAGGTCATCACCTCCGGTTCGATAGAACGATCGGGATCCTGAAAAGAATTGGGGGAAGGAGCATTCGAATGATCAGCCTTCTGAGGCGACTGTGATCGGCCGTCGGCCTCGGGATCGGATCGGCCGATCGAACGTCCCGTCTGAGCGCCACCGGATCCCGGGCACTGCCGTCTGATCGCCACCGATCAGCGCGACTCCGAGTCGCGCCAGGCCGGTCTTCGCGAATCGGAGCAAGACCTCCACCAGCGCACGCTTCCAGAGCGGTCGACCTGCCGATCGATGCCGGCTTCGGCGAGTTTCGGTGCCGGTAGTCAGGATTCGAAGTCGAAACCGAGCTCGGCCGCGACGCGGCAGGCGCCCTCGGCGATAGATTCGCCGACCTCATCGGGGTGCATTCCGATCTGTAACGCGGTATCGAGAAGCTGCGTGAAGGCGTGCTCAGGGTCCGAACGCAGCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.40,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 44043-43637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRW010000008.1 Nocardia terpenica strain N-35 NODE_8_length_356613_cov_38.121427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 44042 37 100.0 36 ..................................... GTCACCGTCGCCCACCACCGTCAAGTGGTCGCCCTG 43969 37 100.0 35 ..................................... CCTGATGGCGCGGGAGATGGTTTCGCGGCGCGGTT 43897 37 100.0 36 ..................................... CAATCCGGTGCGGGCTACGGGGATGGGCTGGTCCAA 43824 37 97.3 36 ......................G.............. ACCTCGTAGGCGATATAGGCCGCCGCCAGCGCGCAG 43751 37 89.2 39 ....................CC......C....G... ACAAATACGGGCATCAGCGCGACTGCGGTTGCTGTCGTT GG [43727] 43673 37 73.0 0 ...A.....G......C...CC.TT.C...C.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 93.2 37 GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Left flank : TGATGACCAGGTCGCGACCCGTATTGGGGGCACGCTCGGGCCCGTCATTGCCGTTTGCCCTGCGTGTCCGGATTGAACACTCCGCCAGGACAGACCGGTAGGACCTCAACGCAATACGAGTTTTCCGTGACCATGCCGCGGCTGCTGGATTTCACCAAAACCGCGCTTGCCCCGTCAGATTCGGGCAACGGGCAGGACCTACTGACTGGTCGATCTAGACGGTACCGGTGTGGGTCAGCAACAGAGGGGCCGCGCTCGACGCTGGGTCGGGCAACACCCGCGCGGCCCTCTGATCTCACTTGGCCGCTCGATCCCGCAGCTTTTCGTGTAGGAGCTCTCTGCTGCACGGACATGCCGAGCGGGTAGCAGGTTGTGACCACCTCATATAAACGGCGACACGCCTGTAGGTTCCGAACTGCCGATGAGGGATTATAGAGTCGGTGGCCCGCGGTGCAGGCGGTCGATCGCGTGTGGAATAGCGAAAACCCAGGTGGAGTACT # Right flank : CTGAATGGGGTTGGCGTTCCGCCGGTTTCGATGGTTATTCGGTTACTCACGACGGGTTCGTTGTCGGGTTCGGCGGCGCCACCACAGCAGCTCGAGGACCGCCATGGCTGCGTCTCGGCGGCTCTGTGACTTGGCGAAGATCGCGACCACCGAGGCCAGAGTGATGAGGAGCATGTAGACGACTCCGGCGGCGCCCCCGGCCGTGGCGACTCCTACGAGCCCCGGTACCCACGATGCGAGAGTCAAGTTGTCTCCGATAGCGCGTCGGTCTCTGCCGAGGGACGAGGTTAGCGGAGATCCGGAGCGCGCGTTGGGAGTTCGAGGAATCTCGCTAAAGACACCTTGGCGCTGCGAGACGCGCCTCTAAAGTTGTTACCGTGGCGATCGCGGCAGGACCGCGATCGAAGGGTCGAAACAGAGGCGCGACGTCGTTGGCGCCCAGGTGAGTGTAGTGGATTGGGAGGCGGCGAGCCTGCTGTCTCCCCAATCATCGGATGCAC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //