Array 1 17036-21166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSFP01000019.1 Mesorhizobium loti strain R7ANSxAA22 contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================================================== ================== 17036 32 75.0 35 TGTCG...........A..........A..T. GATTCATTGCCCCACACACCCCAGCCCGGGCGCGC 17103 31 87.5 32 ....T..T..........-...T......... GCTGGTCAAAGGCGCGCTGCGCATGGGTTACC 17167 31 96.9 35 .......-........................ TACCGTCCTGAAGTCGATGCGGCCTTCGATGAGGA 17233 32 93.8 34 .......T.......A................ TTCACCGGCGTGCCGAGCCATGGCAGGCCGATCT 17299 32 93.8 33 ........C...T................... ACTTCCTCGTTGACATGGGTGTGATCGAACTCG C [17314] 17365 32 100.0 33 ................................ GGTTCGAAGTCGCCGGCATTGACCACTTCGCGC G [17379] 17431 32 90.6 34 .........G........A.....G....... CTCCTGAAGGAACGCAAGCCGCTCCGTCCGCTCT 17497 30 90.6 33 .......-..........-..A.......... GCCTGCATCTTCTTCGTCATGACCTTGGCGGCT 17560 32 93.8 33 ...........GA................... CGCGTCATCGGAAAGCGCTACGGAAACTTGCTT 17625 31 93.8 35 ..............-T................ ACATGACCATCCAGCAATCGGCCACAGCGCTTATC 17691 30 87.5 35 .......A..C......--............. TGGCCGATCGGCTGCAACCATGAGGGCCAGATCGA 17756 30 93.8 34 .........................-.-.... GCATGTGGGCGGCCGGTGTGACGGGAGAAAGCAC 17820 32 96.9 34 ............A................... GATTGCGGTGGGCGCCAATGGCGAGGAGCCGGAA 17886 31 93.8 29 ..............-...A............. GCCCCTGCGTGGTGGGCCTCATCCGGCAC 17946 31 71.9 32 ..A.AGT.G.C.-.TT................ TAAAGACCCTTACGCCGCCATCCTCGCGCCTT 18009 31 90.6 35 .......A.T...............-...... TTGATGCGGATGTATTCGTCGCCGTCGATGTTGTC 18075 32 100.0 34 ................................ CGCTACCGTGGCGCGTCCATCTATAACCCGCACC 18141 31 84.4 34 .......-....A.....A....A.....T.. CACGACCAGGACCTGCGTGACACGGCCGTGACCT 18206 32 96.9 95 ............A................... CGTTGAACTTCCATCCTATTAGCGCAGGGTGTGGATCGTCCCTCTCACGGGGGATCGAAAGTCCAGCGCCTGCGAATACTCGAACGCAGTCAGAA 18333 32 90.6 21 ...........GA...A............... ATGTTCGCTTCCAAGAAGGCT Deletion [18386] 18386 32 68.8 26 ........G..G...T..ATCGAA.C...... CGAGCCGGAGATGAAGGCCGAGCAAC Deletion [18444] 18444 32 90.6 35 .C...T......A................... GTCGTCACGACGCAGGGACCCCTTCGAATGTGTCA GC [18451] 18513 32 96.9 34 .............G.................. CACGAGCGATGGCGCTTTGTGACACAGGCAAGGT 18579 32 100.0 35 ................................ ATGCTCAACGTCGCGCCGTTCTTCATTGGGCGACA 18646 31 93.8 34 .......-....A................... TTCATGGATGAGACCGAAGCCGCGACGATCAAGA 18711 30 90.6 34 .......-....A.....-............. TGCTGCTCGGCCGGCATGGCGAGATCCATTTCGA 18775 31 87.5 31 .......-....A..A..........A..... GGGTCTTTGTCGTAGGTATCGAGCGCAATGC 18837 32 96.9 33 ............A................... AGATGGAGGCTGTAGGAATGCCGCGCCACCTTG C [18845] 18903 31 93.8 34 ............A-.................. ATCGCCGAGGCGCAAGTGTTCCTCCCGACCGGTG 18968 27 78.1 34 ..........-----A.........C...... TTGCCGTCTACGCCGATCTCGCGCACCAGGCCGC 19029 32 84.4 65 ........CAC.A..T................ CATCGGAGGGATAAACGCCAGCCTCGCCCCATCGAAGCTACGATTTCGCAGTCCCACCATCCAAG 19126 31 65.6 34 .CTA.GGG..G.C.C...-............A CCACATAACCCGTTCGAACGCTGCATTGTGCGCA 19191 32 93.8 35 ...A........A................... TCCTTCGGTGGGCAGGTTTTGCTGGCGTGGAAAAG 19258 30 87.5 34 .......-....A.....-............G GCCTTCGACGCCTTCAAGCTGCGCGTCATGCTGA 19322 32 96.9 19 ............A................... CTTCCGGAACCGTTTACTA G [19341] Deletion [19373] 19374 32 71.9 35 CG....GTGGG....C.......A........ GTCGATCGGAGCTATCCGTTTGGCAAGCCTGACAT T [19387] 19442 32 90.6 77 .C..........A..A................ GTTGTGGAGCACGTCAACGGCAAGCGCGCGACGGTCGCCCCACAGGATTTTTCTCGACACCGATATCGAGGATGTCT 19551 32 53.1 24 ........GTGGATC.AAA..ATA.A..G... GACGGGCAGCCCCTTCTACGGCAA Deletion [19607] 19607 32 96.9 34 A............................... ATCAAGCCGCAAGAGCCGATGCTGGTCGAAACAG 19673 32 100.0 34 ................................ TCGTGCTGCAGCGGTTACGACTGCCGCGAGGTGT 19739 32 100.0 35 ................................ AATCCGTTGACCGCCATCCGCAACGGTGGCTCGGC 19806 32 93.8 35 ...C....C....................... CGTTAGGCGCTGAGTACCCAGTCGCTACGCGCCTG 19873 32 96.9 34 ........................G....... TGCCTTGCGCCGTTCCGCTCGTGCGGCATATGCT 19939 32 93.8 19 .......G.......................T CAGAACCACTACACCGAAA G [19953] Deletion [19990] 19991 32 71.9 14 AG...ATG.AC.............G.G..... CAATAAATGCCGGC Deletion [20037] 20037 32 75.0 35 CA....TGC.A.....TC.............. TTTCCACCGCCGAAGCCGCCGCCGCCGAAGCCCTT ACGAA [20050] 20109 31 96.9 33 .......-........................ CTCAAGGAGTGGCTGCCGCACGCGCATTTCACC G [20128] 20175 32 93.8 20 ...............C..A............. GCTTTGGGAGTGAATGATAA Deletion [20227] 20227 32 68.8 33 .....GGTGGA....TC.C.........T... CAGTGCTCCTTGTGCGAGGCGAGGCAGATCACC A,G [20229,20241] 20295 32 96.9 35 ........................T....... AACGGCATCAACTCGGCAATTGACTGGATTTTCGT 20362 31 96.9 35 ..............-................. TACGTCCGCAATGACAAGGGCATCCTGCCCTTCGA 20428 31 90.6 34 ..............-A.............G.. CACGAACGAGGCTTGGGCATGGCTGCGGCGCCTG 20493 32 100.0 57 ................................ TCACGATGGACGATGACGCCCTGATCGCGCTGGAAAGTCGCCCCTCCTCGCGGTCGT 20582 31 93.8 34 ......T.......-................. AGCACCAGGTCGCGGCCGCTCTTGCCCGGCCGGT 20647 32 93.8 33 .......A....A................... TTCATGGCGTTGCTTTGCCATACTCCAGGCGCG 20712 32 84.4 16 .....G......AT...............GC. AAAGCGGAAGGAAATT Deletion [20760] 20760 32 68.8 24 .C..G.GGGG....AAA.C............. CGCGTAGGCCCGATGGCAAGATCA TCGCCC [20778] Deletion [20816] 20822 32 65.6 12 AAA.TT.TCG....CCC............... TTATTTAACCGT Deletion [20866] 20866 32 78.1 32 .CG..TTT..CG.................... GTTGCGCTCCTCCAATTCCTGCAGGCGCCGCT ATCCGGAAGGT [20879] 20943 32 93.8 33 ..........A.A................... CTCCTGAAGGAACGCAAGCCGCTCCGTCCGCTC 21008 32 87.5 27 ........G.A.A.............T..... TGGTACGACCCGGAGGATCCGGCATTC G [21027] Deletion [21067] 21068 32 71.9 33 T..A..T.G.C.CTC.......T......... TCGTTCTAAACCGGAACGGTACCAATTGAGATC GG [21074] 21135 32 93.8 0 ..........A.A................... | ========== ====== ====== ====== ================================ =============================================================================================== ================== 63 32 88.4 34 GTCGCCCCTCTCGCGGGGGCGTGGATCGAAAC # Left flank : CCGCCGCGCGCGGAGAAATGGCAAGCCGCAAGCTCGTCGTGTTCAAACACGCCAATGCGCTCGGCAACGCACCGGCCCATGCGCTCTTCGATCGCCTAAGGATTGGTCGCAACATTGACGGCCTCTTCCGTGATGTCCACGATTCCGGCATCGACAACTATCCACCGGCTCGGAAATACAGCGATTACAAAATTGAGATCGATCGTGACGGCATGCCGGAAGGCGTGGAGATTATCGAGCGTCTGTGAGCATGGCGCCAGGCGAAACTCCGGTCAGCCAACCCGACGAACGGGATGCCGATCCACCCTCATCATCCGAATCCATTGCAAGCGCGACAGCGCGAACGTGGAGCGTGCCGGAAAATTCCGACGGAGTCGCACCGGCGCTGGTTCTTTGAAATCGTGAAACTATGTGCGTCAAGCCGGGTTTTCGCCCTCCTGCTCAGTCGTGCCACCATGTTCGCGATCTAGCTCATCTTTCTTCAATCATCGCTGAGGCAC # Right flank : CTTGCCGCGCGTGATGCCGGAAACGATCAGCGGGGTCGCCCCGGGGCGCTCTGTCCGCGCCTAAGGGCAGATCACCGTCAACGGCGACCGGCGCCTTCATGCCGAGGCGCTTCGCGGCTTCTCGAAATCGGTAGCTAAAGTTGGAGTAGGATTGATCCGTCCACCGCATATCAGCTCATTGGCCAGACGATCATGAGCATCGGCACGGCAACAATGACGACGAGGAACGACAGCGGCAGTCCCAGGCGTGGATAGTCGCTGAAACGGTAGCCGCCCGGCCCCATGACGAGCGTGTTGCACTGGTGGCCGATCGGGGTGAGAAAATCGCAGCCGGCGCCAATGGCGACTGCCATCAGAAATGCTTCCGGCCTGTAGCCGAGATCGCCAGCAAACGCGGCGGCGATGGGCGCCATGACCAGAACGGTTGCGGCATTGTTGAGGAACGGCGTCACGGCCATGGCGGCGACAAGGATGAGCATCAATGCGCCGGGCGCCGGAAG # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [73-107] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //