Array 1 496641-494780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGD010000001.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ014 NODE_1_length_599291_cov_22.435594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 496640 29 96.6 32 ............................A TAGCGGTACGGGTTTTACCGGTACCGGTCGCC 496579 29 100.0 32 ............................. AATTCACATTTAAGAAACTGATCAAGGACAGC 496518 29 100.0 32 ............................. CCGGGCTTTGTGGTGATGAAATTCCGCTGTGC 496457 29 100.0 32 ............................. CGGTTTCAGAAAACGCAGCGCAACACACTGCT 496396 29 100.0 32 ............................. GACCCCCGGCAGACGATTGAATTAATCGATCG 496335 29 100.0 32 ............................. CAGATCGAGGTTATGCCAGGTGAGCCGAAAGA 496274 29 100.0 32 ............................. AAACGTGCCGCCGTCTGGTTAATCAGGATGGT 496213 29 100.0 32 ............................. CGATTGCCGCCGGGGTGATCTCCCTCTATATC 496152 29 100.0 32 ............................. CCTGGATATCTCTAATAAAGGTCATTTTCGTT 496091 29 100.0 32 ............................. TAATAGGTAAATTGTGAATCCGACAACAGCAG 496030 29 100.0 32 ............................. CTGTCCTGCATACGCTCTACCGCGCGCGCACA 495969 29 100.0 32 ............................. AAAAAACTATTACTCACCGCCGCGCTACTGGC 495908 29 100.0 32 ............................. GCATTGGCCCTGTTTTTGATGCGCTTCCGGAT 495847 29 100.0 32 ............................. TGGAGTGAGAGCGCTAACCTTTCTGATTGCCC 495786 29 100.0 32 ............................. TCGCACTCACCTCTCTCGCCACAAAACCACCT 495725 29 100.0 32 ............................. CCGCTGATACTGGTTCAGATGCGAACGGTGCT 495664 29 100.0 32 ............................. TGAGTATGGTGAACCCTCATCTGTCACCGGAT 495603 29 96.6 33 ............................T GGGTATTTTTGGCAAATTATCAGCGGCCATCGC 495541 29 100.0 32 ............................. CCAGTATAGATGCCCACGCATATCTGTAAGCA 495480 29 100.0 32 ............................. ACAACGTATTCAAAAAAATAGACTCCAGAGAC 495419 29 100.0 32 ............................. GTGGAAATAAAATCATCAATCATCTCAGGCGT 495358 29 100.0 32 ............................. CAGGCATTTCTGGCGAAGTCGTCCATGTTGAC 495297 29 100.0 33 ............................. GAGAGCGAGTCGCCGGCGGCTATTCAGGACAGC 495235 29 100.0 32 ............................. CTTACGGCACGGCCATAAAGCTGGCGCTATCA 495174 29 100.0 32 ............................. AAAAAATACGAATTAGTAACTGAATTATCAAA 495113 29 100.0 32 ............................. CGGAGCGTCGTAAATCGTGGCGTTCTGAAAAT 495052 29 100.0 32 ............................. GCCGCATCAACGCCAAACGGTTTAAATCCTCC 494991 29 100.0 32 ............................. CGCCCATATACCGGACCAAGAAGTTGACGGAT 494930 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGCT 494869 29 100.0 32 ............................. CGGATCATATAGGTGAGGATTTCCTCTTTTTT 494808 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.8 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTGATGATGTATTAATCTCCGAGTTTTCCGTCATATGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGTGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGCATGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCAGGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCATAAATGCCTTATCCGGCACCGATCTTATCTCGGAGTTGCATCGAACCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAATGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43502-44324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGD010000015.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ014 NODE_15_length_118539_cov_26.635485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43502 29 100.0 32 ............................. GAAAGCGGCGATATTTCCGGCGTATTGATCCA 43563 29 96.6 32 ............................A ATATGACATTTCGTCACGGTAATAAATTAAAC 43624 29 100.0 32 ............................. CTGGTGGAGCGCCGCGAGGAGTACCTGTCTGA 43685 29 100.0 32 ............................. CATCGGGTTAACGGTTTGTTCGTTCCCTGCCT 43746 29 100.0 32 ............................. GAATTACTGACCTGTACAAACGCTGTAGCGAG 43807 29 100.0 32 ............................. TTTGCAATCAAATAAAATTTTGTGCTTCCCTA 43868 29 96.6 33 ............................T AGGCATTTTCTACCCTGTTGGGTGCCAATACGT 43930 29 96.6 33 ...........................T. CGCTACGGCGCAACACGCGTCCAGTTCGACGGC 43992 29 100.0 32 ............................. GGCTACAAAATTGAACACGAACTGGAGTTCAA 44053 29 100.0 32 ............................. GCGCTGGCGGCGGAATGCGAGAGCAAAAAGAG 44114 29 100.0 32 ............................. GGTTCGCTTCCACTTTCCCCCGCTCATACGCC 44175 29 100.0 32 ............................. CGCGGGGGTGAGTGTGGTTATTCAGTTGGTTA 44236 29 100.0 32 ............................. GTGTGGTTCCAGGTCGTGCTCCGGGAAGGCCA 44297 28 89.7 0 .............C.........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTACATATCGCCTGATGTATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAACGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTATCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGATAGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCTGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53671-53943 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIGD010000015.1 Salmonella enterica subsp. salamae serovar II 1,13,23:z29:e,n,x strain HZ014 NODE_15_length_118539_cov_26.635485, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53671 29 100.0 32 ............................. CCGTTACGGGTTAACAGGTCAATATCTTTACG 53732 29 100.0 32 ............................. TCTAAAACTTCCTGAAATTTACGCTCTAGTGC 53793 29 100.0 32 ............................. TGTTGTTTTTCTGACGGGATGACGCGTTGGGT 53854 29 100.0 32 ............................. GCGGTGTTAGCGGTGCTTTATTATCGCGGAGT 53915 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTACGGTTACTGGGCCTTAGCAACAAGATCTTACTGGCGGATGAGATCCATGCCTGTGATGCCTGGATGTCCCGAATACTCGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCCGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGCCACGCAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAGGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACACAGTGAAGTGTCGTGTCTTGAACGTATAGGCGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAA # Right flank : TTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGACTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCGCTCATTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //