Array 1 17226-13189 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPY01000268.1 Serratia marcescens strain 1057 NODE_381_length_40732_cov_21.979721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17225 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 17165 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 17105 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 17045 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 16985 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 16925 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 16865 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 16805 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 16745 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 16685 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 16625 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 16565 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 16505 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 16445 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 16385 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 16325 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 16265 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 16205 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 16145 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 16085 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 16025 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 15965 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 15905 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 15845 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 15784 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 15724 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 15664 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 15604 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 15544 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 15484 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 15423 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 15363 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 15303 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [15257] 15256 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [15248] 15195 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 15135 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 15075 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 15015 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 14955 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 14895 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 14835 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 14775 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 14715 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 14655 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 14595 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 14535 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 14475 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 14415 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 14355 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 14295 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 14235 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 14175 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 14115 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 14055 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 13995 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 13935 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 13875 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 13815 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 13755 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 13695 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 13635 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 13575 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 13515 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 13455 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 13395 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 13335 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 13275 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 13215 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28449-26075 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPY01000268.1 Serratia marcescens strain 1057 NODE_381_length_40732_cov_21.979721, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28448 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 28388 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 28328 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 28268 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 28208 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 28148 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 28088 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 28028 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 27968 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 27908 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 27848 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 27787 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 27727 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 27667 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 27607 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 27547 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 27487 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 27427 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 27367 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 27307 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 27247 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 27186 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 27126 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 27066 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 27006 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 26946 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 26886 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 26826 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 26766 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 26706 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 26646 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 26586 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 26525 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 26465 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 26405 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 26345 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 26285 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 26225 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 26165 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 26105 28 96.4 0 ....................A....... | G,A,A [26078,26082,26084] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //