Array 1 25381-21778 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376529.1 Clostridium sp. 7_3_54FAA supercont1.18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25380 32 100.0 34 ................................ TTTTTTACCCACTTCTGCACAGCGGCTCCATTTG 25314 32 100.0 34 ................................ CTTATACATTGTTTGGTAAATCATATCTACCCAC 25248 32 100.0 35 ................................ CCGTATCAAGCATATGTGCAGAGGGGGATACTGAA 25181 32 100.0 33 ................................ TCCTTCCCAGTCCTCCAGTTTAATTCCAGCGCT 25116 32 100.0 34 ................................ CGGCTGGTTTTGGATATATCGACATCATGAAGGA 25050 32 100.0 35 ................................ TCCAATCGCCATTTACTTTATAAATATAAAACTAA 24983 32 100.0 34 ................................ ATTTTACGGAGGATATTTATATGCAGAATGCAGT 24917 32 100.0 34 ................................ GCAAATTATGAAACTGGCCGAAATACGCCGATGG 24851 32 100.0 33 ................................ AACAACTTTTACAGAACATTCGTTCGTCTCCCT 24786 32 100.0 36 ................................ AGAAGCCCTGACAAAATATCTGAAAGATGGGGAAAA 24718 32 100.0 35 ................................ TTCGTTGGATGCAGAATAAGCATAAAATCCATAGC 24651 32 100.0 32 ................................ AATCTGATACCGGGACCCCATTGTATCGCTTG 24587 32 100.0 34 ................................ ATCTGGCACCTTCCTTCCGAAAATCTTCATATAC 24521 32 100.0 37 ................................ AGGCTTTGATGTTTGCAGGCGGTTCAATGCGGAGGTG 24452 32 100.0 35 ................................ AGTTTGCGATCGCACCGCTCTGGCGACACTGTTAC 24385 32 100.0 32 ................................ CTCCAGTGCCGGAAGAATCGGAAGCAGTTGGT 24321 32 100.0 33 ................................ AGAGAGATATAGAAAGATTATTTGTGTCCGAAA 24256 32 100.0 33 ................................ CATATATTACCTTGGCCTTTAACGTGATTGTTG 24191 32 100.0 36 ................................ GCGGATCCTTTGCATCATCCTACCAGGGATTGGCCC 24123 32 100.0 34 ................................ ATTCGATGACTCGACGGCTCGCTGATCCATAACA 24057 32 100.0 33 ................................ CTTTTGGGAGCGGGCGGCCTCGGTCTGACCGCC 23992 32 100.0 34 ................................ ATTGCCATACGATCTATGAAATTGCTGAATGTTT 23926 32 100.0 33 ................................ TCCACAAACTTTATGGAGGTGTTGTTTATGAAG 23861 32 100.0 34 ................................ ATATTAGCATCCATGTCGGACGATACAGACGATT 23795 32 100.0 33 ................................ CTGCAGGTAGCAAGTGAGCAGGTGCCGTTCGGA 23730 32 100.0 35 ................................ GTCCGGTAATCTCGCTGGCAGGGCCAGTGGAAGAA 23663 32 100.0 34 ................................ GTTAAAAAAGCAATTGCTGCACCTAGCGCAGTAG 23597 32 100.0 35 ................................ TGATGCGCTGGCACAGAGCAACCAGCAGGTGAAGT 23530 32 100.0 33 ................................ ACCAACAACAAGCCGCAGATTGCATTTACCGTC 23465 32 100.0 33 ................................ GGCAACCTTCCGATTTATGGCGCGGGTTACTAA 23400 32 100.0 33 ................................ AATCCCCTTTAAAATATCTTCATTTAGAAAAGC 23335 32 100.0 35 ................................ ATTCACCTGGAGCTGTTTCCCACTGTAGAGAAACG 23268 32 100.0 33 ................................ TGGGGAGCTGCCCGGTTTTTGCGAGTGAGTATA 23203 32 100.0 35 ................................ TTAAGGACCTGGGCATTGTTATGACGCAGAGTGCC 23136 32 100.0 35 ................................ CTTCACTTTTCCCAGTAAATGTAGACTGCCTGGTG 23069 32 100.0 33 ................................ TCATTGGCAAAATAGGTGAATTAGTACAGATAA 23004 32 96.9 36 .....A.......................... CGTCCCATCCACCACGCCGGGCATAGCGACGGTCAC 22936 32 100.0 36 ................................ ACGGGCCTTTATTTTTACAGTATCTTCCGGCTTCAA 22868 32 100.0 33 ................................ CATAAGATTACTTCAGCCTTCGTTCCTGTTGTG 22803 32 100.0 35 ................................ GTATCCCAAAATCATAAAATTTTGCGTTGTGCATA 22736 32 100.0 33 ................................ GACATTGCGGCCATGCATGGATTTAATCCACGG 22671 32 100.0 33 ................................ AGGAAAGATGCGGAGGGACTGATTAAAATTATG 22606 32 100.0 34 ................................ ATGCCGACCCGCATCTTGATAACAGTCATGCAGA 22540 32 100.0 34 ................................ CTTTAAATAAACCGTATAAATTCCATTTAGCGGC 22474 32 100.0 34 ................................ AGTCTCAACTGGCCATTCGTATAAGACTTCATGC 22408 32 100.0 36 ................................ TTAAAAACGCATTCCGCTAAGGAATGTTGGGCGGTA 22340 32 100.0 35 ................................ AATGCGGGTATCCGGTCGCAACCCCGGAGGAAGTC 22273 32 100.0 34 ................................ GGGGTTACAGAAAAATTTCTACAGGAAGCTATTG 22207 32 100.0 33 ................................ CTTCTTATAACCACAATACTGTTTCGCCTTTGT 22142 32 100.0 33 ................................ ACCCTGTATTTTTAATGACCTACATATTAGTAT 22077 32 100.0 37 ................................ CCTTACCGGATCGAGGTAAAAGAGTATCACAGCAGCC 22008 32 96.9 33 ......A......................... ACGAACAGTATCAGTCGGCTTCACCTTTGCAAG 21943 32 100.0 35 ................................ AAACCGGATGCCGTTGGTTTTTAGATGCTGTTTTA 21876 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 21809 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 55 32 99.7 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 343575-342740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376515.1 Clostridium sp. 7_3_54FAA supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 343574 31 100.0 37 ............................... ATTCTAATTCTTCCTGACTTAACATATTCCGGTTTAC 343506 31 100.0 36 ............................... ATTGATACGGCCGCAATTGGCTATCAGACAACTATC 343439 31 100.0 36 ............................... ATAATGACGGTTTCCGGGAAACTATATGGTGCGCAA 343372 31 100.0 36 ............................... ATGATGATTTCAGCAAGATTATCATTTAGCCACACC 343305 31 100.0 36 ............................... ATCTTCTATATGCTGTCAGCCTGTTAAAGCATCCTA 343238 31 100.0 36 ............................... ATCGAATTCTCCATTGCCGGCTCCCGCCGAAAGAAC 343171 31 100.0 36 ............................... ATTTCATGGGCCCAAGCTGCCAGCTCCAGCGGATGT 343104 31 100.0 36 ............................... ATAATAGACTTCACACCCTTGTATAGTTATGTATTT 343037 31 100.0 36 ............................... ATCCTGCTGTCCCTGCACCTCAATCATTGTCTGCAT 342970 31 100.0 36 ............................... ATCACTAGATAAAAATCTACAACCTTGGTTGCAAAC 342903 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 342836 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 342770 31 93.5 0 ...........................TT.. | ========== ====== ====== ====== =============================== ===================================== ================== 13 31 99.0 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAAGACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : ATTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAAGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 344758-344322 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH376515.1 Clostridium sp. 7_3_54FAA supercont1.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 344757 33 100.0 34 ................................. TAATGTTTCTTTTTTTATGCCTTATTCGGATACT 344690 33 100.0 34 ................................. CCCGAAGTTATCCTGTCTATACGGATTTAGACAG 344623 33 100.0 33 ................................. TACATCTCCCCGGATCGTATCCATGAGTTTATC 344557 33 100.0 34 ................................. CGAAAAGATAGCCGTTATCTTTCTGACACGCCTC 344490 33 100.0 35 ................................. TACCATAAGGAAGGAGGGAACCACATGGCAGTAGT 344422 33 100.0 35 ................................. CACATTTTTGCTAATTTTTCATAGTTTCCCATAGC 344354 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 7 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATTGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCCGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATTGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //