Array 1 927710-928141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082359.1 Limosilactobacillus fermentum strain ACA-DC 179 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 927710 36 100.0 30 .................................... ACAGTGCCGTAGCGTATGCCAATGATGCGG 927776 36 100.0 30 .................................... TCGAACCGCCATCATGCGCTGAGAAACGTT 927842 36 100.0 30 .................................... CATTACCTTTACCTTTCTTGTTGTATACCG 927908 36 100.0 30 .................................... CTATCAAAGCTGAACAGTTCGATGGTTCTC 927974 36 100.0 30 .................................... TCGTCAGTGCCACGCATGACCACTTCATAG 928040 36 100.0 30 .................................... TTGAGCTTAGCAATTGACGCGGTAAGCTGT 928106 36 86.1 0 ............................TA..A.TA | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATCGGATGAATAACCTTGCTCGAGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGCGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGAGAAAACAACG # Right flank : ATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGTGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCGCCGAATCGGCAAGGTGGGGTACGCAATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAATACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1384622-1382273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082359.1 Limosilactobacillus fermentum strain ACA-DC 179 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1384621 29 96.6 32 ............................C GGGACGGCGGACTGGTCGGGGGATTGGCACCA 1384560 29 100.0 32 ............................. AGAGTTAACCCAACTACTAAGGCGGCAACAAG 1384499 29 100.0 32 ............................. AGAACCAACTCTTTTCGATCTTTCTACCGACC 1384438 29 96.6 32 ............................C ACGGCTTACTTTGAACTTAAATCGACTTCAAC 1384377 29 96.6 32 ............................C TGCGTTGTCTTGTCAGTAAAGACCCCGTCAGC 1384316 29 100.0 35 ............................. AACACTAATCCCTACATAATCATCATAGCGAGTTG 1384252 29 96.6 32 ............................C GTTAGCTTGTCTGCGTCCAGTTCAGAAATCGC 1384191 29 96.6 32 ............................C AGGGAACCAAATCACCCTTAAATCGGGAAACA 1384130 29 100.0 32 ............................. TAATATCAATGTATGAAGAAAGGTTAGCTTTG 1384069 29 100.0 32 ............................. CTTGTATATCTTTTAAAGACACCATTTTCACC 1384008 29 100.0 32 ............................. GCTAAAGGCTATGCAACGCAAGAGTACACGCA 1383947 29 96.6 32 ............................C GTGGTTAGGTCAGTATCATTGACCATCTTAAG 1383886 29 96.6 32 ............................C TGAACACGTAATTAGACACCAACGCTTACATG 1383825 29 100.0 32 ............................. TATCGGGGCATCAAGGCGACGCTGGTCGGATT 1383764 29 100.0 32 ............................. ACGAGTTTGACGAGTGGCAGAAGCAAGCCATT 1383703 29 100.0 32 ............................. AACCTTAAATTGGTGTAAGGATCTCCATGGTC 1383642 29 96.6 32 ............................C TACGGTATCGCTACCACTTGGATTTGCTGTTA 1383581 29 100.0 32 ............................. AACAATGCAACACCTAGCTTCATTCCAGCACG 1383520 29 100.0 32 ............................. TATCAGCTAATATGAGTGGTTATCAAATGTTA 1383459 29 96.6 32 ............................C GGCTTGGCAAATCCTAACGTCATCTACGTTGG 1383398 29 96.6 32 ............................C ACGGCGGACTTAACCACGCTCCTGGCGGGAAA 1383337 29 96.6 32 ............................C ATGGACGGTCAAAAGCTAGTCCTTAAGGCCAA 1383276 29 100.0 32 ............................. GATCAAAAGGTCGTGGATTATCTCAACGGCAT 1383215 29 96.6 32 ............................C AGCAACACGGTTGATCACATCGTGCCGATCGA 1383154 29 100.0 32 ............................. GTCCAAAAGCGCATGGATAAGATTAGGCAAGC 1383093 29 100.0 32 ............................. AAGTCACCTACATACCAAGCTGGTTTTGGCTG 1383032 29 96.6 32 ............................C GACAACGTTGGAAAGCTGTTGATCGTGTCTGT 1382971 29 96.6 32 ............................C TTATATCGACCATAATGGGATTCACAACTACG 1382910 29 100.0 32 ............................. AAACTTTATTAGCTTCGCTATCCTTAACACTA 1382849 29 100.0 32 ............................. ACGTTGGGCATGTTGAGCGGCTTGCTTTTCTG 1382788 29 96.6 32 ............................C CAAAGTTGTTCACTCCATACATCCACATCGCA 1382727 29 100.0 32 ............................. ACTACAGGAAGTTTAATTGCTAGTTTTGTCGA 1382666 29 100.0 32 ............................. GAAACCGAAATCTGATTAGCACTTGCCCCATA 1382605 29 100.0 32 ............................. CTTCTCACCCTCGTCAAAGTCAGCATCATCGA 1382544 29 96.6 32 ............................C TGGATCTATCCAGGCCAAGTGCTCAAGCTAAG 1382483 29 100.0 32 ............................. TGTGCGTGTCCTGGTGAAGCTGCTTCCCGGTC 1382422 29 96.6 32 ......A...................... TTCAATAAAAGTATTGACTTTAATCTAAAGTA 1382361 29 93.1 32 .....................A......C ACCGTGCTCACCATTCTCGGTCTCTGCGGCTT 1382300 28 86.2 0 .......TT.....C.......-...... | ========== ====== ====== ====== ============================= =================================== ================== 39 29 98.0 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CATCATCAGAAAGAGCCATAGTGGGCGAGATGTCTCTAGCATTCGAAGTGATGAAGGCGAAATTCTTTTCCCTCGTGGGACTCGATTCAAAGTTGTAAAATACTACCAAGATGAAAATGGTAAAAATATAATCGAGGTGGAAGAAGTTGAATAAAGAAGAGCGGTTAAAATGGCTCCGAGCCCGTGACCAACCCACTGCTGAACAATTAAGGTAATGGGTAAAAGACTTGCCGAAACAAGAAATAACTCCCGAAGAGCGAAAGAAAAGAGAGACTTTTAAAAAGGCCGCCAGTAAAATCCTTGAGGTTGATAAGCGTCACCAAGAGAGGCAATCATGGAATACAGAGAATTCATCCCACAAAAAAGGCTGACTATTGAAATTAATGGCCAGCCTTATGAAGAGATTAAGATTACAACCAAAGATACTCATGAGTTGGTTGTTCTATTTTCACCGGAGAAAGTTGTTTGGTCTAAAACATACAACGTTAGCTTTAAACGGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //