Array 1 1742356-1736593 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHW01000002.1 Trueperella pyogenes strain NCTC5224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1742355 29 100.0 32 ............................. GCCCAATGGCGCACGTTCAGGCGGTCGCGGTT 1742294 29 96.6 32 ............................G ACGTCTTTAGCTTTGTGTGGTCTGCTATCTCA 1742233 29 100.0 32 ............................. CCGCTCTCAGCCTTCCGTTCCGCTGGCGAATA 1742172 29 96.6 32 ............................G TGGGCTTGAGTCAGGCATTCTAGCTGGTCGAG 1742111 29 100.0 32 ............................. CAATACCGGGCATGGAGGCAAGCCATAACCCG 1742050 29 96.6 32 ............................G CTGACTAGCGAAACTGTGGTGGCGGCGTGGGT 1741989 29 96.6 32 ............................G GCTTGGCCGGGTTCGATTGAATGATCCACGCA 1741928 29 100.0 32 ............................. ATCCCAATGGGCGATCGGTAATGGGATTGAGC 1741867 29 100.0 32 ............................. TTCAGGCCTGGCCATTTCCACGAAGCCTATGT 1741806 29 96.6 32 ............................T GACTTAAAGGCTTGGTCAAGGTCAGTAATTTG 1741745 29 96.6 32 ............................G GCTGCGCTTTTCGCTAAGTGCATTAGTGCAAT 1741684 29 100.0 32 ............................. ACCCCTTGTTTTTCACCGTCTGGGGCATACAC 1741623 29 100.0 32 ............................. ACTGACACGATTCGCCCGTGGGGTGCCTCCAT 1741562 29 100.0 32 ............................. GGACGCGTGTTTACGAGGGGCGGGCAAAAGTT 1741501 29 96.6 32 ............................G GTGGAGCCCGGCCGTACACTGTGCATCACCCA 1741440 29 96.6 32 ............................T TTGCATGAATTTTTCAAGCATTTTTATGAATA 1741379 29 100.0 32 ............................. CCTGGAATGAGTTCCACCAAAAGCTCTGGCGG 1741318 29 100.0 32 ............................. GCGCGCCCCATCAAGAAATATATCAATGCGGT 1741257 29 100.0 32 ............................. AATTGCAGGCGGCGGCTGGTGTGGCCAAACCG 1741196 29 96.6 32 ............................G AATTAGACCCTCCGGGAGTCATATCCTCGACA 1741135 29 100.0 32 ............................. TGCTTCTTATCCAGCACACGATTTAAAACCGT 1741074 29 100.0 32 ............................. CCGCCTTGATGATGCCTTGAGCGAGGAACGTA 1741013 29 96.6 32 ............................G TAACTGGGCAGGGGGTCAGTACAGGCGGGAAT 1740952 29 96.6 32 ............................G TGGGGGGTGTGGCCGGGTACACGCACACGGGG 1740891 29 100.0 32 ............................. GCCCCAAACGAGGGTGGCACACCGATCTGGAT 1740830 29 100.0 32 ............................. CTCGGCATCGAGCTCTACCCGTGGCAAAAATG 1740769 29 100.0 32 ............................. CGATACGCTATCGCATTCTACACATTAAAGAA 1740708 29 96.6 32 ............................T CGACTTGTCTTTGTGATAGGGTTTCGTCCATC 1740647 29 100.0 32 ............................. GCCGCGCGGATGCTCAACGCCGGGCAGATCCC 1740586 29 100.0 32 ............................. GCGGACCGCCACAAACCGTACTGCTTCGATGG 1740525 29 100.0 32 ............................. CCGCCCGGGGACAACAGGAGACATTATGAACA 1740464 29 96.6 32 ............................T ACACCGACGGGCAGTCGGATACGCTCCAGCTG 1740403 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCCGCCAGGGTG 1740342 29 100.0 32 ............................. GCGGCGCAGCTCGATGGGCTCACCGCCGAATC 1740281 29 100.0 32 ............................. TACGTAGCCTGCCTGGTCGATCCAGACGATAC 1740220 29 100.0 32 ............................. TTTTAGAAACGCGGTAAATACCGCGTGGGAGG 1740159 29 100.0 32 ............................. CGGTTCGGAATCAACGTGAAGGGGCTTCACGA 1740098 29 100.0 32 ............................. ACTATTTCGTCTTGTTCAAGGTTGGCATACGT 1740037 29 96.6 32 ............................G TGGAATCAATTAAGGCCCTGCAACGGGTCTTG 1739976 29 100.0 32 ............................. CAGACGCCGTGCAATCGACTGAGGCGGCCGCC 1739915 29 100.0 32 ............................. CGCTTCAGACCTGGCGAGGCCAGCTCAGTGCG 1739854 29 96.6 32 ............................G GACGGTCGTGGCGTACGCAGTATCAGCAAATC 1739793 29 100.0 32 ............................. GATAAGGAGGCAGCGGCATGAGTCGTCTTTTC 1739732 29 100.0 32 ............................. TGGACGTCCTCGATGACCGCGCAGACCGGCAA 1739671 29 100.0 32 ............................. GATTCCGGTGATGCCTACGACGCCCTACAGGG 1739610 29 100.0 32 ............................. CGGGTTCTATAGTGTAGGGTGCCCACTTTCAC 1739549 29 100.0 32 ............................. AATCCAGTTGAAGATTCACAATTCTGGTGGGG 1739488 29 100.0 32 ............................. GTCGTTTGGAATGAGGGTGTAGTCAGCTGTGC 1739427 29 96.6 32 ............................T CACCCTCAAGCCGGGTCTCACACACGTACGTG 1739366 29 100.0 32 ............................. GATTGGCGGGCTCGTACACTCGGCGATGCTCG 1739305 29 100.0 32 ............................. GATTGGCGGGCTCGTACACTCGGCGATGCTCG 1739244 29 96.6 32 ............................G GAAAATCCGGCTGAGGCAATCACCGCTTTTGT 1739183 29 100.0 32 ............................. CCGTGAGCACTTCCAAGCCGTGCTTGACACCG 1739122 29 96.6 32 ............................T ATTGCTACGGCTGTGGCCGGGATGGCTGGAGC 1739061 29 100.0 32 ............................. GGCATCAAGATCGGCGGCACACGACTTTTCCA 1739000 29 100.0 32 ............................. ACCTAGACGAAGAAAGATAAATGCTATGACAA 1738939 29 100.0 32 ............................. CATCACTAAAGCAGACGGCGAAACGTGGTTCG 1738878 29 100.0 32 ............................. TGCGCGCAGTCGAGTAATAGAACGCAACACGT 1738817 29 100.0 32 ............................. AAGTGGCGAATCAAGGGCGAATTTGAAGCACA 1738756 29 96.6 32 ............................G CCCCCGATTTATGGGAGGCGTGGTCAAAGCAG 1738695 29 100.0 32 ............................. CTCGAATCGTGGAGCACGCTGCCTACAATTGA 1738634 29 100.0 32 ............................. CCAAGTACGCCCCAAAACTTTCGCCACCGACA 1738573 29 96.6 32 ............................T GAAAGCCCGCCTCACATACAGCCGAAAGAAGC 1738512 29 100.0 32 ............................. CGTCGCCCACTCACCGAAGCTCAACGCGCCGA 1738451 29 100.0 32 ............................. TGCTTGGAGAGGTTGACGATATTCTCATCTTG 1738390 29 96.6 32 ............................G TGTGAAAGAGTTGCAATTCCCTGAATGGGGAA 1738329 29 100.0 32 ............................. GCAACGGCGGCTTTTCCGGGGTTGTCCCAAAC 1738268 29 100.0 32 ............................. ACACTCGGCAAGCTAACCTCGTGGCTGCCAGA 1738207 29 96.6 32 ............................G TTGCGCCTGATGTCAGACAGTGGGGTAATCTA 1738146 29 100.0 32 ............................. GCCTCGAGGTCAAAACAGTACCCCACTTGACA 1738085 29 100.0 32 ............................. TGTTGGCCAATGATCATGCCCGGTTGATGTTA 1738024 29 100.0 32 ............................. CACAGCCGCTACGCCAACCCCCGACAGTTTTA 1737963 29 100.0 32 ............................. GCCCGCATCAGGGCAAACAACACCGCACGCGA 1737902 29 100.0 32 ............................. AAGGTACGTGCAGCCCCCCTCAGAGCAGTTGC 1737841 29 100.0 32 ............................. CCCCATAATTTCACCCACAGCGAACGCAACCC 1737780 29 96.6 32 ............................G ATTACGAGTTAATGGTGGATACTGCACGGCAA 1737719 29 100.0 32 ............................. GAAAGGAACACAAACTCATGAACGCAATTGAC 1737658 29 96.6 32 ............................G TGATTAACGCCCTCGGCGGGCTCGCTGGGCTC 1737597 29 100.0 32 ............................. GACCTGAGTTCACCATTACCCCGCTTCAACCC 1737536 29 100.0 32 ............................. TGGTACCAGGTAAACGATACGATGTGACGGTG 1737475 29 96.6 32 ............................G CGGGCCCTAGTCGAGCTAATCCACACCGCCCG 1737414 29 100.0 32 ............................. GCTCATAAAGCTCAAGGGCTGTAGCTAGCACA 1737353 29 100.0 32 ............................. GCGCTCGTGGACGCCGGTATTTCTCTGGGTGA 1737292 29 96.6 32 ............................G ACGTGACGGTGACACGTGGGTGACAATCGCGA 1737231 29 100.0 31 ............................. TTTAGAGGTGATTTTGCTTCCGTGTGCGGAC 1737171 29 100.0 32 ............................. GACCTGAGTTCACCATTAGCCCGCTTCAACCC 1737110 29 100.0 32 ............................. TGGTACCAGGTAAACGATACGATGTGACGGTG 1737049 29 96.6 32 ............................G CAATCACGCCCCGGCGCGGGCCTCAAGATTCC 1736988 29 100.0 32 ............................. CCATACAGGATCGGTTCGTGATCGTCCTCGTA 1736927 29 96.6 32 ............................T ATCCACGCACGCGCGAAGAATTATCCCTGAGG 1736866 29 96.6 32 ........T.................... GTCTACACGCTCAACCCGACCGCCGAAACCGG 1736805 29 96.6 32 ............................G TCGATCGCTGAACTTGCTGATGAGGTTCTTGC 1736744 29 100.0 32 ............................. TTTCGCTTCCCATCCTCCGTATAAGCAGACGC 1736683 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGAGAT 1736622 29 89.7 0 ......T...................T.A | C [1736597] ========== ====== ====== ====== ============================= ================================ ================== 95 29 98.8 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCACATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAAGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACA # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCACAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGCCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //