Array 1 401-1663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCL01000117.1 Mycobacterium tuberculosis strain Bir 92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 401 36 100.0 38 .................................... CTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 475 36 100.0 35 .................................... TCTCGGAATCCCATGTGCTGACAGCGGATTCGCAT 546 36 100.0 37 .................................... TCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 619 36 100.0 40 .................................... TTGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 695 36 100.0 41 .................................... TAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCCCGGGTCG 772 36 100.0 37 .................................... TGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGG 845 36 100.0 36 .................................... TAGCGAAATACAGGCTCCACGACACGACCACAACGC 917 36 100.0 36 .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 989 36 100.0 39 .................................... TCTCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGT 1064 36 100.0 24 .................................... TTTGAATAACGCGCAGTGAATTTC Deletion [1124] 1124 36 94.4 36 .CG................................. TTTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA A [1128] 1197 36 100.0 40 .................................... TCAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCAG 1273 36 100.0 36 .................................... TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 1345 36 100.0 41 .................................... TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGG 1422 36 100.0 24 .................................... CTTGAATAACGCGCAGTGAATTTC Deletion [1482] 1482 36 94.4 36 .CG................................. ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCA A [1486] 1555 36 100.0 37 .................................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 1628 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 99.4 36 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATCCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCAGAAACACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCTG # Right flank : | # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 42-1087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCL01000023.1 Mycobacterium tuberculosis strain Bir 92, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 42 37 100.0 37 ..................................... AGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 116 37 100.0 34 ..................................... CGACGATGGCCAGTTTTCCGGCTTCTATCAGGTA 187 37 97.3 35 ....................................C CTCATGGTGGGACATGGACGAGCGCGACTATCGGG 259 37 97.3 36 ......G.............................. GGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 332 37 100.0 34 ..................................... TGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 403 37 100.0 34 ..................................... CCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 474 37 100.0 23 ..................................... TTGAATAACGCGCAGTGAATTTC Deletion [535] 534 37 94.6 35 .CG.................................. AGCGAAATACAGGCTCCACGACACGACCACAACGC A [538] 607 37 100.0 36 ..................................... GGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 680 37 100.0 35 ..................................... CTTGACGATGCGGTTGGACGAGCGCGACTATCGGG 752 37 97.3 36 ......G.............................. GGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 825 37 97.3 39 ....................................G CATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 901 37 94.6 39 ...C................................A CACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 977 37 97.3 37 ..................A.................. TGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1051 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 98.4 35 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACT # Left flank : CCCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGGG # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 475-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNCL01000078.1 Mycobacterium tuberculosis strain Bir 92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 474 37 100.0 34 ..................................... TTTTCTGACCACTTGTGCGGGATTAGCGGGCTTA 403 37 100.0 38 ..................................... AACACCTCAGTAGCACGTCATACGCCGACCAATCATCA 328 37 100.0 35 ..................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCA 256 37 100.0 33 ..................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCT 186 37 100.0 40 ..................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCG 109 37 100.0 35 ..................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCA 37 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 99.6 36 TGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAG # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //