Array 1 13716-12564 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUPJ01000049.1 Bacillus cereus strain AFS030663 AFS030663_110_D5_Contig49_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================================== ================== 13715 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 13649 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 13583 32 93.8 32 .C..................A........... TCTCAGGGAAATTAAATCCCATGCTACCACCA 13519 32 100.0 33 ................................ CCGTCAAGGTCTGCATAATCATTAGGGTCTTGT 13454 32 100.0 34 ................................ TACAATACTTACAAAAAAAGATTGGCACTCATTT 13388 32 100.0 35 ................................ TTTTTCATTAAGAGCATGTGGTTTGAAATATTGAA 13321 32 100.0 34 ................................ AGAGGGCGTTGATTATGTGTAGGAAAGTAATTTT 13255 32 87.5 33 ..........TG..G......A.......... GATAAAGGGTTTGCAATCATAAAAGATATTGTT 13190 32 90.6 36 ...A......G........A............ TCTGAGGGGACACCTTATATGGAAGAACTAAGAGGA 13122 32 93.8 33 ...A...............T............ TATAAAAAAGAAGTATGTTGATTTAGTTAAGCA 13057 32 93.8 35 .........G...A.................. TCAATACATAAATCCAAAAAACTAACAATCGGGTC 12990 32 93.8 35 ...........C....A............... ACAAATGAACGTGTAACAAATGGATTTTTGCTACT 12923 32 93.8 33 ...........C...C................ TATATTGGTCGTACAGTTAAATTAAATCGTCCG 12858 32 90.6 33 ..................AT...A........ CACCCAAATATCGGAAAATTATAGAGTTTTTTA 12793 32 81.2 100 ....T....CT.T......T..T......... CTCAATAGAAATTGTGGAAGTTTGAAACACAAAAATCAAACCCCTTATAGGGGTATGGATTGGGATTTTTGTCATCACATCGTATTTACTGTACATGCTG 12661 32 87.5 33 C.........T..AT................. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 12596 32 75.0 0 ....T....C.......CA....AG...G.C. | A [12569] ========== ====== ====== ====== ================================ ==================================================================================================== ================== 17 32 92.1 38 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAATTCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : GGTAAGATGCTTGATATTAATTTAGTGCCTCTGCTGGAGTAAGTGGCACTGCTTCAATTCATACAGCAACTAGTGTTGAACCAATTGACATTACTAGTATGCAGATTACGAAAAGTATAAATTCTGATCCTGAGAAGGATAAAGTTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATTTTTTATGGAAGTATTCATATGTAATAAGCAAGGAGACAGATTCACCAAAGGTGATGCAGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCATGCCCTGAGGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAAATTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATGTTAAGCGGAACATTGACAAACCAAAAATAATTGATGACTATAACATTTTGGTAAATGAATTAGATATTTTAAAAGTGGCGATTATTGATGGACT # Questionable array : NO Score: 7.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.60, 5:0, 6:0.25, 7:-0.34, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 20862-19970 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUPJ01000049.1 Bacillus cereus strain AFS030663 AFS030663_110_D5_Contig49_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20861 32 100.0 35 ................................ CAGAAAGCAAGACTCTACTTCGATACAATCTACGG 20794 32 100.0 35 ................................ TTTTGTTGCGCCTAAGTCTTTCCAAGGTCCTTTTA 20727 32 96.9 33 ...........A.................... CTTAGAACCTATAAAAGAACAACCTTCTACCAA 20662 32 93.8 34 .........C...A.................. TCAGAACCTTTTTTAATAATGTAAATAAAGATCA 20596 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 20530 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 20462 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 20397 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 20331 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 20265 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 20199 32 96.9 34 .........C...................... TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 20133 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 20067 32 93.8 34 .........C.........T............ TACCTCGGGTTTATATTTATCTGGAACGCTCATA 20001 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 95.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGAGTTAGCAAAATAAAGGAATTTTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : AGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATATCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTACGAGATAAGCAATTA # Questionable array : NO Score: 8.28 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //