Array 1 8926-9462 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVCN01000232.1 Saccharopolyspora erythraea D scaffold00232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 8926 25 80.0 50 ..A.A........G..T....G... ACGGTGACGTACCAGCGCCGGATCGCGGTACCGCTGGGAAACACTATCTC G [8928] 9002 24 84.0 46 .........-..........CA..T GTCGATCCCATTGCGGCGAGTTCGGTGCGGGCCAGTTCCGTGACCA 9072 25 96.0 46 .....................G... CCCGGTTACAGATGTGGCCGCTGCCCATAGCCCTCTCCCTCTGGTT C [9085] 9144 25 92.0 48 ............G........G... GCCGGTGACAGTCGCCGACTACACCGACAGCTCTACCGCCATCGTGAT 9217 25 96.0 46 ................G........ GCCTGTGACAGCCGGGTACTGGTTGATGCACGACGCAGGGTTTTGG 9288 25 100.0 53 ......................... GCCGGTGACAGCCGGCTGAACAACTCCGGCCGGATGCCGGCAAAGGTGAAGGC 9366 25 100.0 49 ......................... GCCGGTGACAGAAGGTCGGCGGCCGTGCGGATGCGCACCCGGGCATGGT 9440 23 92.0 0 .......................-- | ========== ====== ====== ====== ========================= ===================================================== ================== 8 25 92.5 48 GCCGCAATGAGGACCGACGCTTGGC # Left flank : TGGGCGCGCGGGGCGACATCACGAGCGTCGCGGTATGGACCCCCCGGGGTACTCCCAATCTGGTCTCGCAGATCAGTGCGGCGCTGACAACGGGAAAACCACTTCATCTGGACTTGCCGGGTGTACGGCTGCGACTGCGGCCCCAGGATGCCGAGCCCGTCACGGCTGGGTTGTCGGGTCCGTCCCGAAGCTGGACGACGGTGACGCCGATGGTGCTGGATCGCTACCCGGGTAAGGGCAGGGAAGCGGCGGAGATCGCCCGCACATGCATCCGAAGTGGACTCCCCAGTCCGATCGAAGTGACTACGAGCCGGAACCCGTTCGTCCACGGAGCCGCCGACCTCGGCCGATCGCAACTACCCCGCCGAGACAACCGCCCGTACACCCACGCGAAAATCACGTTTGCCGAGCCAGCAACAGGACCGGTTCTGTTGGGATCACAGAGATATCTTGGAATGGGCCTGTTCCTGCCGACCCATAGCTGAACTCGGACGGCTACC # Right flank : T # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGAGGACCGACGCTTGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 16-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVCN01000309.1 Saccharopolyspora erythraea D scaffold00309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 16 31 100.0 39 ............................... ACAGTAGCGAGTTGGCGATGTTTGCCTGGCCCGAGCCTC 86 31 100.0 43 ............................... CGGTGCAGCACAGCCCGTGTCGCGCGTACGGCGGCGTCGCCTC 160 31 93.5 41 ..................TA........... CTGGGCGATCCGCTCCCCGTCACGCTCGACCAGGCGGCCTC 232 31 90.3 0 .............T....TA........... | ========== ====== ====== ====== =============================== =========================================== ================== 4 31 96.0 41 AATGAAGGGCCGTCCCGGCGGGGACGGCGAG # Left flank : CTGAAACGAGTTGTTA # Right flank : GGTGTTCCACGTCGAGCTGTAAGGCTGCCCTTGAGGTTCCCCCGAGAACTCGGAGGGGTTGGTTACCTGGTTCCGGTTGGGGATGCTGGGATCGTATCCGGTAGGGGCTGGACTTCCTGGTTGGCGTGCCAGGCGCTCTCGTATTCGTCGGGTGAGAGCCAGCCCAGGTCCTTCTGGATGCGCTGGGTGTTGTACCAGCCGTCGATGTAGCCGAAGATCGCGTTTTCGGCCTCGTCCCGGGTTCGCCAGGAGTTCCGATACACGAGTTCGATCTCGCATGGGCATCGGCGACCGCGTCTGACCGGGAAACGGGCTAAAAGGAGGGGCGGCGCGGTGTGCTGAGCGCACCGCGCCGCCTGCTTGTCCCCGTATCGGTGTGGCAGGTGCGAAGAAACCTGCCCTCTCCCAACGAGCCGCCCGTCATGCCCGCGGCCGGAGGGGGCCGTGCTGGCCGGAAACGGCGAAGTCGAGACCAACCACGGACGCCTCACCGCCCCCTG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAGGGCCGTCCCGGCGGGGACGGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5312-5559 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVCN01000290.1 Saccharopolyspora erythraea D scaffold00290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 5312 36 100.0 34 .................................... CTCGTCGGTCATGGATTTGCGCGCTTCTTCGCGC 5382 36 100.0 35 .................................... TCGTAGTTGACCGACGCGTCGGTCATGGTGCGGTA 5453 36 100.0 35 .................................... CCCTCGGCTGGTGGACTATCAGCGGCGTCGCCCTC 5524 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 4 36 100.0 35 CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Left flank : CGGCGCCGCGCCGGAGACGCTCGGCGCGCACCACTACGACCTGCTCGGCATCGACGATCCGCGACTGCACAATGTCAACGTCCTCGACCAAGACGAGGCAGTATCAACCGAAGAACTAACGGAGGCCCAAACCCTCTGCGAGAAGCTGCATATCCCAACCGCATTCGCGGCACGCGTGGCGATCGGAATCCGCGGGCGAGGAACCTGACTCCACCCCGAACAGCGACTTCGCCCCCACGACACAGCCCGCGGCGACCGCAGCAGTCACAAAGGATCGCTGTAGTCACGGCAGTCACAACATGCAGCTCGGACCACCGGATCGTCCGCGAGCGGTCCGGCCACGACACCGCCAGGCAGAGGCGCTCGCAACGGGTTACCCCTGGTCAGAAGCGAGAAACAGGCATGTAAGATTGACATCGGCGACCGCCGAGATCGCTACCGAGCATCCACTCGAAACGATCTTTGAAAACGCAGGACACGAGCACCAACAACAGGGAGCC # Right flank : CGATGCCCTTCGTGCTGGCCTTGCCCAGCGCGTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCACCGGCGCCAAGCGTCGGTCCTCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //