Array 1 581643-583791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065058.1 Streptococcus equi subsp. zooepidemicus strain SEZ18 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 581643 26 100.0 40 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGTCTCG 581709 26 100.0 40 .......................... CTTTCTCAATACCAACAGCAACCCCCATCGGCAAGTCTCG 581775 26 100.0 40 .......................... TTTCTCGACGGCTAATTTTGTTGATGATGTCAAAGTCTCG 581841 26 100.0 40 .......................... CATAACGACATCTGACACGCCTTTAATTGACTTGGTCTCG 581907 26 100.0 41 .......................... TTCGATTCCTAATCTTCTGCGTTGCCTTTCTCTTTGTCTCG 581974 26 100.0 40 .......................... CCTTTAAGGTCAAGCTGAGGCTTCTCAGGTCTCTGTCTCG 582040 26 100.0 40 .......................... ATAGGCTAAACTATCGAAATATTTACCTAGATTTGTCTCG 582106 26 100.0 40 .......................... TAAAATTACAAAAGTAGAATCTTTTACGATTTCGGTCTCG 582172 26 100.0 39 .......................... TGCTTGTTTTTCTGCTTCACTCTTTTGTGATTCGTCTCG 582237 26 100.0 42 .......................... TTCTACGAAGCTATCTAGCAACTGCTGGCCACCCTTGTCTCG 582305 26 100.0 40 .......................... TGCGATGCTAGGTTTTTTCTGCATAGTAACGTACGTCTCG 582371 26 100.0 40 .......................... ATCAATGAAAAGAAAGTAAATCCCAAAAAACACAGTCTCG 582437 26 100.0 40 .......................... ATCCCTAGCCCTAACCATAACCCCGTCACCTTCGGTCTCG 582503 26 100.0 40 .......................... CCATGGATGACCATGGCTACATCATGCCTGTGGTGTCTCG 582569 26 100.0 41 .......................... ATCAAGTCTAACCGAGCATCTGTCAAGCGAGCATCGTCTCG 582636 26 100.0 41 .......................... TCAATTAATTGTTGTAACTTTGACAATCTCTCATCGTCTCG 582703 26 100.0 40 .......................... TTTTTGAATGGTTGCTGAAACCTGTAAGAATACAGTCTCG 582769 26 96.2 40 ......G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 582835 26 88.5 42 ...TT.G................... CCTTGATAAAGATCTATTAACGCTAATCTAACATTTGTCTCG 582903 26 88.5 41 ...TT.G................... TCTCTGTTATCTGTTCTCGTTCGAATTCGGCAATTGTCTCG 582970 26 88.5 40 ...TT.G................... TTCATCAGTTTTTACAAAACTTGCAACAGTTATAGTCTCG 583036 26 88.5 39 ...TT.G................... TTGTTATTTTTTATTTTGCTATGATACTATATTGTCTCG 583101 26 88.5 40 ...TT.G................... ATAGGCGCGGCCTACCTTGGATAAATCCTTGACAGTCTCG 583167 26 88.5 41 ...TT.G................... CAAATCAAACATTGACGAATAGCCCAACCAACATCGTCTCG 583234 26 88.5 42 ...TT.G................... ACTACCTACAAAAACCTCTCCGCCACCAGAATTTAGGTCTCG 583302 26 88.5 41 ...TT.G................... TATATATTGATGATTTACTACAATTGATATAAACCGTCTCG 583369 26 88.5 40 ...TT.G................... AAGTAGTAACTCATAGTTTTTTTGATTATCAGCCGTCTCG 583435 26 88.5 39 ...TT.G................... TCTTGATCTATATCCTGCACCTCCTGTAATTATGTCTCG 583500 26 88.5 41 ...TT.G................... GACAATAATCACAACGTCCACACGACTTAGCTTCAGTCTCG 583567 26 88.5 39 ...TT.G................... AAATACTATCTGCAAAATGGTGGTCTGTCTTTAGTCTCG 583632 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 583699 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 583765 26 80.8 0 ..TTTC.T.................. | T [583789] ========== ====== ====== ====== ========================== ========================================== ================== 33 26 94.1 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //