Array 1 157506-158244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQZ01000011.1 Listeria monocytogenes strain NRRL B-57063 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 157506 29 100.0 36 ............................. CGATAATAATGCCTAGTTTTTTCATTAACCCAACGT 157571 29 100.0 36 ............................. TAATCAGAAAGAACATATTCGTCAACTTTTTCTGGC 157636 29 100.0 34 ............................. GGCGTTAACAATTACCTGACGGGGTTAAAATCAA 157699 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTCAAT 157765 29 100.0 34 ............................. GATCATTTCGGCAAGTGTCCCAGCGGCTGACAGA 157828 29 100.0 35 ............................. TGAAGTTTTCGAAAAGCGCTCGATTTTTTGCTAGT 157892 29 100.0 35 ............................. TTAAAAAAGGGTCGTCTGCAAAATCAATTATTCAA 157956 29 100.0 34 ............................. ATTGATGCCATAATCGGTTCTAACAACGGCATTC 158019 29 100.0 36 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGAA 158084 29 100.0 37 ............................. CAAAGAATGAGAATCTCACAAGTTGAAGAACTTTCGA 158150 29 96.6 37 ..............A.............. GAAAAAGCACTTTTCAGCACTCGTTCGTTTTCTTTTT 158216 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 98.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCAGGAAACGCAACCGAACGCTTACAAAATTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGAGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 175141-178787 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQZ01000011.1 Listeria monocytogenes strain NRRL B-57063 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 175141 29 100.0 34 ............................. TAAAATAAATAAAGAAACTCATTAGGTTGCTTAT 175204 29 100.0 36 ............................. TCCGCTGTTACTGGTGCAGTAACTTCACCAGATTGG 175269 29 100.0 36 ............................. AAAAGAGTATCTGCACCATTAGCTAATTCTTTAATC 175334 29 100.0 35 ............................. TCAAATATATGTCTGAAATGATTTCGGACAATTTT 175398 29 100.0 34 ............................. CAAATTTTGCCACAAATGCCACAAAAACAACGGA 175461 29 100.0 35 ............................. AGAAAATAAAATATTCATCGAGGAACATCGAAAAT 175525 29 100.0 37 ............................. AAAAAAGAACATCCTCTCAAAAGGATGTCTTTATTTT 175591 29 100.0 36 ............................. GTTGTTCCACTCCCGCCGCTTACACGTCCGACTTTC 175656 29 100.0 37 ............................. GATAAAAGCGAACTTGTGGACGAAGAAGAGAATAAAC 175722 29 100.0 36 ............................. ATATTTCTTTGTATGTCCCATTTTTGGAGGGTGATT 175787 29 100.0 36 ............................. TCAACATAGCACCGTCGGCAAATGAAAGTCCTAAAG 175852 29 100.0 36 ............................. CCTGTATCACAAGCTTTAGCTACAAAACTCTCTCCG 175917 29 100.0 38 ............................. CATTTTCAAGAATTTCATGTATAAATAATCTCCCTTTT 175984 29 100.0 35 ............................. TCATTTGGCACTAACGCTCACCGCCTTGCATCCAT 176048 29 100.0 35 ............................. CAAAACAGAGAACGCGTGTTCATTATCGGACATCT 176112 29 100.0 37 ............................. TGTTAAGTTTTATATGGAAGCTGGCATGAGTGCGGAG 176178 29 100.0 34 ............................. TATGCTTAAAAGCTGCTTGGTCTAAAGCGAAAGA 176241 29 100.0 37 ............................. AAAAACATGCTAGAACCAATACCGCGCTGGGAGTTCG 176307 29 100.0 35 ............................. GAATCCAATCACCTTCCGCAACATCGTATTTCATT 176371 29 100.0 35 ............................. ATAAAAGTTGCTATCATCGAACCTATTGCAAAAAT 176435 29 100.0 34 ............................. TCGTTATCCTCATAATTTTTAGCCGCTAATCGAG 176498 29 100.0 37 ............................. GTAGAAACGTAGAATCTTACTTTTTTATCGTTCATTC 176564 29 100.0 35 ............................. GCGTTAACAGTTCCAATAGCAAGCGCGTCTGTACC 176628 29 100.0 35 ............................. CAAATTATCAATAATTATACTAGCTATGAGTTTAG 176692 29 100.0 35 ............................. TTATTAAACCGCGCGTTTTTTTCCATTCCGTTAAA 176756 29 100.0 34 ............................. CGGATTCATTTGCTGGTTAGGTCGTTTGTTAAGC 176819 29 100.0 36 ............................. CCATTAATGCGTGCAGCATTGTTTAATCCGGAATTG 176884 29 100.0 36 ............................. TCATTTGCAGTCCTGATGAGGATAACGGTATATCAA 176949 29 100.0 36 ............................. GATATTATATTGTGCGAAAATATCGGCAGTTGATTC 177014 29 100.0 35 ............................. AGTAATGAGTAGCGATTAAATTCTAACGCCTATTC 177078 29 100.0 36 ............................. TCGACTGAGTCCCACGTCCACGTGATTGAGTCATCC 177143 29 100.0 34 ............................. TATTCTCTTTTAGCTAGCTCTAGCTGCTGCTCTA 177206 29 100.0 34 ............................. ATGGTTGTTGATGATCTTTGGGACGATGGTTTTA 177269 29 100.0 37 ............................. TCAATCTGCACTTTGCACTTTTGCGTGTCGTTATAAA 177335 29 100.0 36 ............................. GAAAAAAGGCATATGTATCTCAAAGCGAACGCGAAA 177400 29 100.0 35 ............................. TGCACAAAACCTTGATTATAAGTTGAAGATGTTCT 177464 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 177530 29 100.0 35 ............................. ATTTATCACTGCGATTAAATCGGGGGATTTTCAAG 177594 29 100.0 36 ............................. TTTCAACTGAAGCTACATGTACATGAATATTATCTG 177659 29 100.0 36 ............................. TTTGACTTGAAGAAGTAAAGTACCTCCTGCTTTACT 177724 29 100.0 34 ............................. TACATCGAAATAAAGTTCTTTGCTGTCCGGCTCG 177787 29 100.0 38 ............................. TATGTGATGTTACATATTCTTTTATATGGTTCACGTTT 177854 29 96.6 36 T............................ ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 177919 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 177984 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 178048 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 178112 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 178175 28 93.1 36 .....................-...G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 178239 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 178305 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 178371 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 178437 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 178502 29 100.0 35 ............................. CAGTTTACTTCAATGGATGAAGCGCACGAATACAC 178566 29 100.0 34 ............................. TTGGATGAAGATGAAGTGATAAATGATGGAGAAG 178629 29 100.0 34 ............................. ATGTTAAAACTACTGGTAGACCATTGGAGAAACG 178692 29 100.0 37 ............................. ACGCCAGAAGCTGGTGATAGGAGAGCGCGAGATATTC 178758 29 93.1 0 .......................A....C | C [178781] ========== ====== ====== ====== ============================= ====================================== ================== 57 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGCCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 157518-158676 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQZ01000008.1 Listeria monocytogenes strain NRRL B-57063 PROKKA_contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 157518 36 100.0 30 .................................... CGATTTTGTATGGAGACTTGCGACGAAGTT 157584 36 100.0 30 .................................... TCAAGTGGAAATTCAAGATGTTATTCGTAA 157650 36 100.0 30 .................................... TTCTTTGGTCTTCACTTGCCCCGGTTTTCC 157716 36 100.0 30 .................................... CCCGCGGCGAGAGGTAGGGCGAAATCCTTC 157782 36 100.0 30 .................................... AATATGTGTACATTATTTAACTTCCTTTCT 157848 36 100.0 30 .................................... TGAACAAAGCAAAAAACGAACGCATCGAAT 157914 36 100.0 30 .................................... TGGAATAATTGATAAAGTAGCGAAATTTAT 157980 36 100.0 31 .................................... TAACAGAAGCGGAAATTAAAGGTATGCCCGG 158047 36 100.0 30 .................................... TCTATTACTTTCGTCCCTGCATCTTCCCCT 158113 36 100.0 30 .................................... ATCCATAACCGGAATAGATGGTGTTATTCC 158179 36 100.0 30 .................................... TGATACTGCGCAGGGTGATGCTAGTCTTGT 158245 36 100.0 30 .................................... AAATGCGCAGATGATGATACACGAACCGGC 158311 36 100.0 30 .................................... TTTTAAATTTAATCTTAACGGATTACTACG 158377 36 100.0 30 .................................... CTGAGTATTAAAGTTATGGCGTAATAGATG 158443 36 100.0 30 .................................... AAATGAAAAATAATCAACACGAAAACATTG 158509 36 100.0 30 .................................... TGACCGAGAATATATTATAGCTCCACTTTT 158575 36 100.0 30 .................................... GAGTATCTCAATTTTCAGCAGAAGGCACCG 158641 36 83.3 0 ........................CA.C.A....CA | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGTTGCTCTTTGAAAATAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAAGAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAATCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAGGTTTTCTCGCCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTATAAGTGAAGGGACCTGCCGCTGAAAGGTGAGGGGCAAAATAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //