Array 1 16384-19412 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBGO01000039.1 Vibrio metoecus strain YB4D01 YB04_D01_contig_39_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16384 28 100.0 32 ............................ ATTTAGCGGCGTATCGAATACAACAAACCGCC 16444 28 100.0 32 ............................ ACCCGCGAATGATTGACGGAATAAGAGGAACA 16504 28 100.0 32 ............................ TAACCGATTACGATATTGTCGTACCGCCTAAC 16564 28 100.0 32 ............................ GTGATCAGCAGGCCACGAACTTGCTCGAAGAA 16624 28 100.0 32 ............................ GTTTGATGTCGGAGGCCATTGTTGCGGCGGGT 16684 28 100.0 32 ............................ TAATACGCATCAAGCTATTGTAATTATGAACG 16744 28 100.0 32 ............................ ACCCACCACCGCCTTGCGGCGGCGGACTGCTG 16804 28 100.0 32 ............................ ACGCTGTCTAAATCAGCGATAACTGGCTTTTC 16864 28 100.0 32 ............................ AGAGACAACTTTTCTAACTTTGAGCAACTGTC 16924 28 100.0 32 ............................ AGCAAGTTCTTCGATATGGGGTTTGATGCTGC 16984 28 100.0 32 ............................ GTAACATAAACTCGTTGTTACAGCGTTGTAGC 17044 28 100.0 32 ............................ TAATGTTTCAACGCATCGTTGCATTACTAATG 17104 28 100.0 32 ............................ TCTGCGTGTACGTGATTACCTGCGTCAGATGG 17164 28 100.0 32 ............................ ACGCCAGACATTCTCAAAGTAAAGCCATTTGC 17224 28 100.0 32 ............................ GTTCTGGCGCGTCGATTGAGTTGTTATACGAG 17284 28 100.0 32 ............................ GCAAGAAAGTGAACCGCCTTCAGATAAAATGA 17344 28 100.0 32 ............................ TTGATACTCGTAATCATAAAAAGATGCCGTTC 17404 28 100.0 32 ............................ CCAAACATCGGGCGCGGTACAGCGAGCGTCAC 17464 28 100.0 32 ............................ AAACACCAGTCGAGCCCGTTCCCGACCCTGAT 17524 28 100.0 32 ............................ GCAAATGAGCGCGCACAAGCTCATGGAGCTTG 17584 28 100.0 32 ............................ TACGCTATGGGCTTGATAAGAACTTGGCGATG 17644 28 100.0 32 ............................ TGCCTTGAATCGACCAAACTCATCACGACCAG 17704 28 100.0 32 ............................ CACTCAGTTGCGTGCAGAGCACATCGAGTACG 17764 28 100.0 32 ............................ AGCCGTCCCAAGCTGAGTATCCGCATCCGCAC 17824 28 100.0 32 ............................ TACGCAACCTGCCTAGACGACTGTTTAACCCC 17884 28 100.0 32 ............................ TAAGAAATCCAGCTCCAACGAACGAGTTGCCG 17944 28 100.0 32 ............................ TTTTACAAGGAGTTTAGGGTCATAGTCAGATA 18004 28 100.0 32 ............................ AGAATCTTTTGCGCTTGGGCTGGCGTACCACT 18064 28 100.0 32 ............................ ACTGGCTGACCTGGATCTAACGTATCGAGCAC 18124 28 100.0 32 ............................ TGCATGGTCTTTTCATTCACTCTTAGCGGAAT 18184 28 100.0 32 ............................ TCGATGTATAGTTGAGAACCGATTCCAGCATT 18244 28 100.0 32 ............................ TGTAATTAACGGCGTATGGCTGATTCTGGTTT 18304 28 100.0 32 ............................ GTAGAGGTTAGATGCACCAGACGATGGCACTT 18364 28 100.0 32 ............................ AAAATGATGGCAGGTGGCTGGGCAGTTACCAC 18424 28 100.0 33 ............................ ATTTTCGCCTGCGCGACTAAACAGCTTTGATGA 18485 28 100.0 32 ............................ TGATCTAACGAGGTTTCAATGTCGATTAAACC 18545 28 100.0 32 ............................ ATAGTTTGACGTGATAGGCGTTTCATCCTTCT 18605 28 100.0 32 ............................ AACACGGTTATGTTTTTCATATCTAGCCTTGG 18665 28 100.0 32 ............................ AGAAAAACGCACTTGCGAAACTCTTTTAAAAA 18725 28 100.0 32 ............................ TTGCAATAAATGCGCGATCAAATGACTGGCGA 18785 28 100.0 32 ............................ ATTTGCGGCACCGACACCGGAGTACGTTATAT 18845 28 100.0 31 ............................ ACATACCCATATTTTGTATTTGCACCTACTA 18904 28 100.0 32 ............................ GTGGAAGGTTTTTTTAGATTAAAATGGAAGTC 18964 28 96.4 32 A........................... AGCATCGCTTTTGCGTTACCGTTGTTCGCTTG 19024 28 100.0 32 ............................ TGTTTGCGGTCAAACTCTAGCGCTTGGTTTGA 19084 28 100.0 32 ............................ TCATCGCTATCATCAAAAAGCATCCATAGCGT 19144 28 100.0 32 ............................ CTATTCGAGAAAGGCATCTATACCAATCGCAA 19204 28 100.0 32 ............................ GCATCCTGAATGCCTTCATGCACCGCTTGATC 19264 28 100.0 32 ............................ TGTAAAAATCGTTTCTCACCTCATCTTGAATT 19324 28 100.0 32 ............................ AAAAGTTTGGCCTTAGACGTTAGTTCTTCAAT 19384 28 92.9 0 ......................G.A... | T [19404] ========== ====== ====== ====== ============================ ================================= ================== 51 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGTGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGACTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTAGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACGGACTGTTGTAACTTATTTTTATAGATTTATTCTATA # Right flank : ATCTTTATATATCTTATGGTTGGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTTTCACCAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGCAACTACGATGTGACGTTAGGGGATACCGCTAAAGCGGTCGGTAGTGGCGCTCTGCGCTCTCTGGCTGGGCTTGGCGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATGCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCGCTAAGCTCCCGTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12827-9016 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBGO01000013.1 Vibrio metoecus strain YB4D01 YB04_D01_contig_13_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12826 28 100.0 32 ............................ GCCCTGAGTCGCTGCCACATAAGCGCCCGATT 12766 28 100.0 32 ............................ ATATGTCCTCACTGTGGTACACCGATCCCCGA 12706 28 100.0 32 ............................ TAAATAAATCGAACACTTTTAAACATGTGCAT 12646 28 100.0 32 ............................ AATCGCTAATTGAGGGAAAGAGAAACCCACGT 12586 28 100.0 32 ............................ TGTAGCCTGAATAGACAAAAAAAGGTTTTTTT 12526 28 100.0 32 ............................ TGCAAGCGTGGAGCCAAGTCTTGATGATGTTT 12466 28 100.0 32 ............................ TGGTATCGCCCAGAACATCACCGTGACCAGTC 12406 28 100.0 32 ............................ TCGACGTGCGCGGCTGAGATAGTCTTGCGGCT 12346 28 100.0 32 ............................ ATAAAGGTGGTTCTACAAGGCCAGATTAATGA 12286 28 100.0 32 ............................ GACACTTCGCCCGCCGTAAGTGACGGTTTTAC 12226 28 100.0 33 ............................ GATTTTTTGATTTAATTACGAAGTCTTCTTCTT 12165 28 100.0 32 ............................ AAACACCGCCAACGAAAAGTGATAATCACCAA 12105 28 100.0 32 ............................ TTGACTCGTATCACGTCTACTATCCCGAAGCT 12045 28 100.0 32 ............................ TCACTAACTGGGAGTTAATGCAGTTGGTGGAG 11985 28 100.0 32 ............................ ATCAACCGCATACACCGAATTCTTGCCAATCC 11925 28 100.0 32 ............................ TGACGCTCTCGGTACAAGTGCTTACAACGCAA 11865 28 100.0 32 ............................ ATTTTTGAATCACTGAAAGATGAGTGCAGTAA 11805 28 100.0 32 ............................ TCACGCAATTCTGTGAACTGAAAGGAATTAGC 11745 28 100.0 32 ............................ TTCAAGCTCGTTCTGTGTTTTTGTCAAATCAC 11685 28 100.0 33 ............................ CAGCGCCAGTGCCTCACTGCCTGACTGCAAGCG 11624 28 100.0 32 ............................ CTGCGCCAATCACGCCTATTGCTGCGCTTAAT 11564 28 100.0 32 ............................ GCCAATTGACACGCCAAGCGATGCCACCATAG 11504 28 100.0 32 ............................ CGACTAGAAACTGCACCACTTCACTAACCATT 11444 28 100.0 32 ............................ ACATTACGACCCCATGCATCCCAGTTAATCAC 11384 28 100.0 32 ............................ ACTAAGCCAAACGGACAGCTGGATACTTAGCG 11324 28 100.0 33 ............................ ATAATCAACTCACTGTTGCGACTATCTCAACCA 11263 28 100.0 32 ............................ CGGTTCATTGATCACTTGGTGGAGAATGACAG 11203 28 100.0 32 ............................ TGTTGGCGGTGGCGGTGGTGGTTCCGGTGGCG 11143 28 100.0 32 ............................ AACAAAAGAAAGTAGATGTTCGCCGCCTTTGC 11083 28 100.0 32 ............................ TATACCCAGTTTGGCCGCCGTTCTTTTCTGCA 11023 28 100.0 32 ............................ AAGACGAGAACACAACCAAAGCAAACGTGATC 10963 28 100.0 32 ............................ TTACAGGTTTGCGTACAACGCCGCCACGCCTG 10903 28 100.0 32 ............................ CATCAGCAGTCGCATAAATCGCATAATCAACT 10843 28 100.0 32 ............................ ACTTTAGGCTCTGGCAGTTCGTTTTTAAAATC 10783 28 100.0 32 ............................ ACGCTGCACGCTCAATGCCTTTGCCGCCATTG 10723 28 100.0 32 ............................ GAACAAAGTAGCCGGTGTGTATGACTTTCCTG 10663 28 100.0 32 ............................ TAGATCAGAAATCTGGTGACGTAACTGGTCGC 10603 28 100.0 32 ............................ ACTAAAAGCGTTGATGCAAATAATAAAGTTGC 10543 28 100.0 32 ............................ CGTTGAACCCGAACCCATAAAGGCATCTAAAA 10483 28 100.0 32 ............................ TTTCCATTCAAGCACTTCTTCTTATGCAACGA 10423 28 100.0 32 ............................ TATTGTTCGTGACATTGAGCGCAAAAAGAAAA 10363 28 100.0 32 ............................ TATCGGCTCTCGGGTGATGCGCCGCAATTATG 10303 28 100.0 32 ............................ ATCAACCGTCACGCTCTTAGCAAGCTTTCCAG 10243 28 100.0 32 ............................ CTATCAGTTTCAAGTGGGGGAGAGGTTAGAGT 10183 28 100.0 32 ............................ GTGTATGAAATGAGCCGCCGCATGGGCGCGCA 10123 28 100.0 32 ............................ GTATGTAAAAGTCACTGCTTATATGAAATCGG 10063 28 96.4 32 ...................A........ TTTTAAACAGGGTTTAAACGTGGCGGTGAATG 10003 28 100.0 32 ............................ AACTTGGGAGGGTGATCAACAAGCGCAGTTTG 9943 28 100.0 32 ............................ TAAAACAGTGGCTCAGGAAGATGGCGAACCAG 9883 28 100.0 32 ............................ ATGAAAAGGATAACGGCAAAGAAAATGAGAGC 9823 28 100.0 32 ............................ GATACATGACACTTTAAATATTTTATTTACTG 9763 28 100.0 32 ............................ ATCCGTAGAATGCGCAACCTAGAAGTTAGAAA 9703 28 100.0 32 ............................ AACTGAATCAATAAATTTCATTTTAGTCTTCC 9643 28 100.0 32 ............................ ACTTTCACGCCTCTCTGATTTAAGCTTTTGAA 9583 28 100.0 32 ............................ TGAGAGTATGGATAGTGATTACATTCCAGCGA 9523 28 100.0 32 ............................ GCGAGGATTTTGCTTAATTTTTGCAATTTCTT 9463 28 100.0 32 ............................ GTTCGGTTTTCGAGACGTCTTTCGCCGTGTTC 9403 28 100.0 32 ............................ AAGCGAGAACACGAAGACAAAGACCGCGCACC 9343 28 100.0 32 ............................ ACGTATCCCCGCTTCAGCAAAAAGCGCCCCGA 9283 28 100.0 32 ............................ GTTGAGTTCAGTCTTCAACATGGTAACTCTAA 9223 28 100.0 32 ............................ TTAATAATATTCTGACTAAGTGACTGACCTGA 9163 28 96.4 32 ...........C................ GAGAAAGTGTTTGATAATCTCGGTTTGCTCAT 9103 28 100.0 32 ............................ GCGCTAGGCATATCGAAATCAGACGTCAAAAC 9043 28 89.3 0 .............T...........TT. | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGTAACTTACGTAAGTTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCTGTCCTATGGGCAGCAAAATCTGGCAAACCGCTGGTGGAATGTTTAGCGGATTTACAACAAAGCAAGCCGACAACATTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCACCAGACAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGAAAAGCACATCACAAGATGGGAGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGCGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGTTTTTTACCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTGAACCAAACGATGCAGTTCACTTTCAACATTTTAATGAGGTTCCTACTTTATATTGTGCATATTCATTATGACCTGCCTAATGGTGCTTTCGATATCAGGAGTCACCTCTTTTCGAGGTGTTGCGAGTTTTTTCAAGAGTTCTGCCTGGCGGTAGTCGGAAACATCACCATAGCTGTAAAAAGTAGTCAGTACGCCTTCATGACCTAAGTTTTGGCTCCAAGCTTTAAACTCTTCCGCGTTGCTACATAATTGCTCCCCTAAACGAGCTAGTGTGTTGCGAAAGCTATGTGGGTTGTAATAAGGCAATCCTGCTAGTTTGAAACTTTGCTTGAAGATTCTTCTGATTGGGTTTGCTGTTGTCCAATGCTCTTTTGTTAATCCCATGGCTTCAAACTGAAAGTTGGGGCTGTTCTTCACTTTCGTTTTTGGGAAAAGGGGAGCTTCTGGGCCGAATGAAAGCTCATTTGTTAGATAACTCACCCATTCGGTAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //