Array 1 337196-337824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZD010000002.1 Pseudomonas aeruginosa strain Patient_1_Baseline 54655_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 337196 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 337256 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 337316 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 337376 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 337437 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 337497 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 337557 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 337617 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 337677 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 337737 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 337797 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGATCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATGACCGCAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 182314-183242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZD010000010.1 Pseudomonas aeruginosa strain Patient_1_Baseline 54655_c0010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182314 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 182374 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 182434 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 182494 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 182554 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 182614 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 182674 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 182734 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 182794 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 182854 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 182914 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 182974 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 183034 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 183094 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 183154 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 183215 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 193702-192117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEZD010000010.1 Pseudomonas aeruginosa strain Patient_1_Baseline 54655_c0010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193701 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 193641 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 193581 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 193521 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 193461 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 193401 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 193341 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 193281 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 193221 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 193161 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 193101 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 193041 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 192980 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 192920 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 192860 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 192800 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 192740 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 192680 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 192620 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 192560 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 192504 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 192444 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 192384 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 192324 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 192264 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 192204 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 192144 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //