Array 1 1567751-1567356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000002.1 Nostoc sphaeroides CHAB 2801 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1567750 36 100.0 36 .................................... CCCTCCACCTGCTGTTTTAGAAACCCCTGGCAACTC 1567678 36 86.1 36 ACCAA............................... CCCTCAAAGATGCTGCGCTCCGCATTCGGGCTAAAT 1567606 36 100.0 35 .................................... TTCATTGCGTATTCAATCATTCCCGCGTTCGGTTT 1567535 36 100.0 36 .................................... TTTGCAAAAATCGTTGGCTCGATCAATGAGTAAACT 1567463 36 100.0 36 .................................... AGAAATAGGATCGCTATTTTTTTGATAATCACTATC 1567391 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 97.7 36 GTGCTTTAACCTTAGATGCCGTAAGGCGTTGATCAC # Left flank : ACGTTGGCGCAAAGCTTATAAGTTGTTGGAGGGATATGGAGAACGGATACAGTATTCAATTTTTCGCTGCGTCATGAATCAACGCGATCGCGAAAAATTACGTTGGGAGTTGGAGATGATTTTGGCAAAGGAGGATTGTATTTTATTTGTGCGTTTGAGCGATCGCTGTGTGCAGGATATACCCAAGTACAATCGACCGGGTACGTGGGAAAATACAGACAAGCCTTTTTTGATCATCTGAAAAATGCAAGCATCTCTCTTTGTTCAGGCGCTGAGGGTCGATATAATTGCTATAATCCTTACAAATACTAGATTTGAGGAATTTTTGAGGCGTTGTAGGTGCTTGCAAAATTTGTAACCTCTCTTATGTCTTGGGTTTTGGATAATCAAGCTAGATTATAATTGAGTCAAAATTGCAAGATTTTAGTTTGTTGTTGGTTTTTTTGGGAGGTGCTTGTAAGCTTGGATTAGAGCGCTTGCACGAATAAGGCTTTCAAGCT # Right flank : TACATGGGCAAGTCGTTCTTCTCTGGCTGGGCGTGGCTCCATTGAAGCGTTTTCTGCCACAACGGAACCGATACCCTTACCCAGTTACACCGCGTCTTTATGACGTGGCTCCATTGAAGCAGATACTTGGCTTTGCCATCAGCGATCGCATCAGCAAGTTACACTGCGTCTTTATGACGTGGCTCCATTGAAGCGTATCGCCAAGCGTTCTGTATCCCAAATTATGTGCGGCTTAACCAATGAATAGACCCGTTCCCCTCGCCCTTGCACCGACGATTTTTACTAGGGCTGTAAATCGGGGATATCTGCGATTGACAGGAATTTACATGAGGATAAGGTATTAACCGATTCAGGTATAACTGCGCTCATTTGGTAAATTTGCTCCTTTTTGTATTGTTTATACGTTACTTGTATTGCCATATAACTAACCCCTAAAAATATCTAACCCGCCTCATGGGAAGCGGGTTTTTGTTTATTGAGTAGATCTAGCAAATCGTTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACCTTAGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 1741217-1740732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000002.1 Nostoc sphaeroides CHAB 2801 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1741216 36 78.4 41 T...T.A.....C..C.....A......C-....... CTGGAAGAGTGTTTGTCTGTTGATATGCCGTATAGTTTGCA T,T [1741196,1741203] 1741137 37 97.3 36 ............................G........ TTTACGTTGGAGGCAAAGAAGTAGCTAGCTTTGCAA 1741064 37 100.0 36 ..................................... AGTTTACGATAGCTGGACGGCTGCTGGTAAGGGTTT 1740991 37 100.0 36 ..................................... CTCAAGCTGTGCGATCGCTTCTTGCTGATAAGTATG 1740918 37 100.0 40 ..................................... ACGGAAGGCTTATCTATGCTAAAGGTGGTGCTGATTATTT 1740841 37 97.3 36 .............................G....... AGTGCGATCGTCTTTTGATAGAATCCCGGTTCAGTC 1740768 37 97.3 0 .............................G....... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 95.8 38 GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Left flank : CGTTCCTTACATTTCACATCTGTTAAGTGTAACGGCTTTAGTTTTAGAAGGTGGCGCTACTGAAGAAGAAGCGATATCGCTGCTCTTTTGCATGATGCAGTCGAAGACCAAGGCGGCAAACCCATTCGTGAGGATATCCGTCAACTCTTTGGTGAAACAGTTTTGGCTATTATCGATGGCTGTACTGAGTGGGACACACCTCCTAAACCTCCCTGGCAAGAACGTAAGCAGCATTACCTCAATAATCTCCGTTCTGCTTCACCTTCTGTACGCTTAGTTTCTCTGGCTGACAAACTCCATAATTCCAGATCACTTTTAGCTGATTGGCAACAACATGGAGATGTTATCTGGACTAATTTTAGTGCCGGTCGAGAAAAAACTTTGTGGTTTTACCAATCATTAGTTCAGGTTTACCAACAGACCGGATCTGATTGGATGACACAGGAAATCGAAAGAGTTGTTAATCAATTGTGCCAGGAAAACCCTGCTTAATCTTTAGA # Right flank : CGCTCGGTGCTGAAACTGTTACAGAGCAGGCTTCCTGGGAAGCATTTTGGCAAACCTCAAAAATAGGTCGATTTCAGCCGCTCTTATTGAGACTGATTTGCAACTTCCCTTAGCACTGAAACTGTGAAACTATTTACTTGTCAAGGTTCTGGCGATTTTGGCAGATCCCCAGGGTTTTTGACCCCGCTTCGACTTGCCAAATATCAAACTGATTCCATAATCAGTGCGATCACTGATTACCAAGCCAGCAAGGTTCAAAAAATCGCCCCTGACGAACAAGCCACAGCCCAAGCCGAACTCGACCATTTCATCGCAGATCAAGCCCAAGCTGTAGCTCCCGAACCCTTCAGAATAGTCGAAATCTCGTTTGGTGATCATGAATATTACGCTGGTGATGAACTGATAGCCAGCATCACCCATGACGACGACCACTTAACGCAACGCTGGGTAGTCATGGTCAACGGTAAAGAAGTATTTCGTACCAACACTGTAATGCGCTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC # Alternate repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTAGTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 1760551-1761034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000002.1 Nostoc sphaeroides CHAB 2801 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1760551 37 100.0 37 ..................................... CTTTTACCTGAGTCTTCGTCGTAAATGAAAAATCTGT 1760625 37 100.0 39 ..................................... GTTTATGACGGTTTTTCAGTTTGTAGGTGGCTTTGTCGT 1760701 37 100.0 36 ..................................... TTTTTTAGTTAAATAAACTATACCCTAGTGTTTATC 1760774 37 100.0 39 ..................................... TATTGATCATGATGATTTTGAAGATAATGAAAATTCTGA 1760850 37 100.0 37 ..................................... TTGCGATTGTCTCCACCAAGCTCAGAATTGTGCCAAG 1760924 37 100.0 37 ..................................... TCCTCATTAATCCCCCATACTTTAACTTCAAACTCAA 1760998 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 100.0 38 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : CTATTTGATTATTTACGATCTGCCTGATAACAAAGCTGCAAATAAACGTCGCACTCGCTTACACAAAATGTTATCTGGTTACGGAAAATGGACACAATACAGCGTTTTTGAGTGTTTTTTAACAGCGATACAATTTGCGACACTCCAGACCAAGATAGAAAAACTGGTTAAGCCTGAAGAGGATTCAGTACGATTATATGTACTTGATGCGGGCGCAATCAAACGAACAATTACATACGGTTCCGAAATTCCTCGACAAGAGCAAACAATAGTCTTATGATTATGTAATTAGATTGATGTTTGGCAAATCGAAGCGGGGGCTAAAACCGTGGGGGTTCTGCCAAAATCGCCAGAACCTTGACAATTGAATAATTCCAGCGTTTCAATAATTCGGGAAGTTGCAAATTACTTGCAATAAGGCAGGCTGAAAATGACCTTTTTTTTCGATCTGCCAAAAGCATTCCCAGGAAGCTTGCTCTGTAACAGTTTCAGATGGAGCG # Right flank : CATCAAATAGTAATTGCGATCGCAGTTGTTCAAATTAGTTTTCAACAACTAACTCATCGCCAAGGGAATTACTAGCTGTTTGGCTCTTGTAAAGTCAAAAAGGATGGAAATTGCCTACAATATTGAGCATTATTTTAAAGCCATAAGTAATGCCAAGAGCAGCATCATCTACTAGTGGTAAACCAAAGCTAAAGCAAAAATCTGTTGCTTCTGTTGTGACATGGGCAGATGAAACCGAATTAGTGGGATTAGTGTTTGAACTTGAGTCAAGTGCTTCTGCTTTACTTTACTCGCAGTACACGATAGGACTGCACGCGTGGTTTCTTGAGCAGGTACGACAATTTGACCCAGACCTTTCAGCGTATCTGCATGATGGAGAGTCAGAAAAGCCTTTCAATATCTCAGCGCTCTCAGGTCAACTAGTTGCTAGTGGCAAACAATTACAATTAGAAGCCAACGAAATTTACTACTGGCACGTCAATGCTTTATCTCAACGGGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1762858-1762599 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000002.1 Nostoc sphaeroides CHAB 2801 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1762857 37 100.0 39 ..................................... GTCTAGGTTAGTAATGCAACGCGATCCCAGAAATGGTGT 1762781 37 100.0 34 ..................................... TCTTTTGGGCATACTTGCTAGCAAATGATGGAAA 1762710 37 100.0 38 ..................................... TCATTTTTATACGCAATTAAATCAAACTTTAGATGTTG 1762635 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 100.0 37 GTTTCAGTCCCCGTGAGGGGATTTGGTTTGTGGAAAC # Left flank : CCCCATCTTTGATAACCAGACTACGGAAATAGACCTTGTGTTGTCAATGAGGGCAAACAGCACTTTAACATTGCTCTAAATATCCTTTACACTCTAAGCTGGGGTCTGGTTTATCGCTGTTGTACCAAATAATATGCGACTTTCCAAAATACTTTGCATTCAGCAAACTTGCTTTCCAACCATTCCATGATTAGCTGAATTTGCTGCTGCTCAAGACCGCTACTGCCTTGCCCATAGTTATCAATGGTCGGTTGGACTGATTTAGATTTGAGAAAGTTCAAGATTTTCATAATGATGCGAAATGCTACTATAGCCAGGATTCCCATTTGATCAGGTACGATGAACTACGTGCCGCATAAATCTAGCGATCGCTCTTAGTTAAGGTCGTTACATTTTCTACATTAGTCACATCCAGTTTGCTTCTTTTTGGACTCAAACAAGATACAGCAGATTATTACTAATGCACAGCTAAACTAACAGTCCCTATTATTATTTAAAAT # Right flank : CGCTCCATGCTGAAACTGTTATGGGGCAAGCCTCCTGGGAAGGTTTTTGACGGATCGAAAATTTTGGTCATTTTCAGCCGCTCTTATTGCAAGTAATTTGCAACTTCCTACTTGATTGAAACGCTGTAATTATTTATTTGTCAAGGTTCTGTCCGTTTTGGCAGATCCCCCAGGGTTTTAGCCCCCGCTTCGATTTGCCATCCCATCAAGCTGATTACATAATCATAAGGCAATTACTTAATCGTTGTCCACAAGCAAAGGTTTTTAACTATTACTTTGCTGTTTAAGCGATTTTCTGGCTAATTTTACGTAAGTTTTCACGGTCAACATCGGCATCTCTAAATCTTCGGCGATTGCCTTCAATGATTCCCCCATCTCTCGCCGGGCCAGAATCGTTGCCCAGGTGACAGCAATTTTATCAGTACGCTGCCCTCCTGTGCGTTTGCGTTGTGCAGTAAATAATTCTGTCAGTTCCTCAATTCGCTCTCCAAGCAGATTTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGATTTGGTTTGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 5 1823101-1823573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000002.1 Nostoc sphaeroides CHAB 2801 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1823101 36 100.0 36 .................................... GTTTATTGAACGCAAGCAGGCAGAAGAAGAACTTCA 1823173 36 100.0 44 .................................... GACGCGCGCACCGAAGACGCCGCGCCGAACTCATTCCTGTTCGA 1823253 36 100.0 34 .................................... AAGCAGTTCCGTGAGCAACCAGCCAATAAACAAC 1823323 36 100.0 35 .................................... CTTTGTAAGCCATTATTCCATGCTTGACCATTAAA 1823394 36 100.0 36 .................................... AACTAAAAGCTGCTGTACGACTACACTTGACTGATG 1823466 36 100.0 36 .................................... CAATATCTCCTTTAAGTGAATTGGATATACTATCAA 1823538 36 94.4 0 ....A..............................G | ========== ====== ====== ====== ==================================== ============================================ ================== 7 36 99.2 37 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TCAGCCATATCGCATCGACTGAGGCTGAATTATGTTTTTATATGTAATTGCTTATGATATTCCTTGTGATAAACGACGAAAAAAGGTAGCAGATTTACTGGAAGGTTATGGACAGCGTGTTCAATATTCTGTGTTTGAGTGTCAGTTGACTACCGAGAAATATCAAGATTTGCGTCGTAGATTAAGAAAAAAGCTGAAGTTAACTGAAGATAGTCTACGATTTTATCCTTTATCACGGCATACTCTTTCTCAAGTAGAATCTTGGGGTGTGGGGCCATCTGTGATTGAACCGCCTAGTTCGGTGATTATTTAATTGATGTTGTCGAGGTTCAGGTGAAATGGCTGAAATGCTTATTTGAGCGTTGTGACCTTCGGTGACTTACAGGATAAGGGTTTGGGGCATGTTAGTGATTGATGGAATGGCAGTTTGGCGATTAATTTTTGTGACCTTCGGAAACGGCTTCTGGACTCCTTACTGGGTAAGGGTCTAAAATTGGGGG # Right flank : GCACAACTAATCCAATTTGTCAAAAAATAGAAAATATTTAGCTAAAACCAGATCAATTAACTCAAAGCCTTTCCAGGAGGGGATTTGAGAAATTTAGCAATCTTAAAAATGAATATTGACTATTATTGGACATTCCCAATATAAATTTATACAATCGAACCGGACACCATAGAAAGGGATTCACCCATGTCAGAAGCATACTGGCAAGCAAAAATATGGGGATTACTCCATGATCCGGTGCTAAAAGCGTTACACAACAACACTGGGCGCGGTGACAATAGCTTTTGGCAACAATTAGAAGTGATGCAATCTTGGGTGCAAAACAATTATAATCCTGAAGAGTCCGGGCGTAAAATCTTAAAACATATACATTTAGCTGATTATATCGCCTCCGCCAGTGATAGAGGTGCAATTGGCAGCATTGCCCAAAGTATAAATTATGCACCTGGAAAGGATTCCCAAAAAGGGTTAGAAATCTCTCATTTGCTGTCTGGCGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 246388-245634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000001.1 Nostoc sphaeroides CHAB 2801 tig00000000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 246387 37 100.0 35 ..................................... ATGCTTTTGCGCCTCTGTATTCATCTAATGTGAAT 246315 37 100.0 36 ..................................... TTCGCACTTCGCTGCAAGTCCTTTTCACTGCTCGCT 246242 37 100.0 37 ..................................... GAAGGTTTTCTCAACCTAAAACTCGTTTTCGCACTTC 246168 37 100.0 37 ..................................... ATAAAACTATAAAATTGACTAATAAATTAGAAGTTAG 246094 37 100.0 34 ..................................... GAAGCATGGGACGGAATGAAAAAGACTTGGAAGA 246023 37 100.0 35 ..................................... CCTGGCTTATGGCAAGCAAGAGTATCTTGTAAAGA 245951 37 100.0 34 ..................................... ACAAGCTTTCTATGGTGGTAACATTCTCAACGGC 245880 37 100.0 34 ..................................... TTGATGAAGCTGGTATTTTATTAAATTCTCGTGA 245809 37 100.0 32 ..................................... TGATTTTAAAATAGCTGATGATGGGACTGTAG 245740 37 100.0 33 ..................................... CTAAATAAGAAAGCGATCGCAAACTAGTTAAGT 245670 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 100.0 35 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCGGTTCTCAAGTCTTACGGGCAATGGATGCAACTGAGTGTGTTTGAGTGCGATATCACTCTCACTCAGTATGCTAAACTGCGATCGCGTTTATCTAAATTGATAAAACCCGACACCGATAGCGTGCGCTTTTATTTTCTCTGTGGCTGTTGTCAGCGAAAAGTCGAACGCATTGGTGGAGAACAGCCACGAGACGAAACAATTTTCTTTGCTGAATCTGCTTCTAGCTAAGTTCCTGTATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCCACAGCCCCAAAAAAATGCTTCTATCTCAACTCCAGCAAGGCTTTCAACCTATTAGTCGCCTAATCCTCATCCGCGCAACCTCTGAAATGCTTACCAAAATGCGATTTCAGCCTTTAAATTTTACTGGCGCTCTTTTCAAACGAATTCTCTAATGCTATGATTGCCGTTGAATCGCGCAACCGCACCTTGGAAACTAAATATAGCTTGGGTTTTAGGCTCCCGCC # Right flank : CATATTGTCATGTAGCCAAAAATCTTTAGTCTACTTCAGTAGACTTTAGCTAAAAGCCAAAGAACTTTAGTTCGAGGCGGGTGAGGAAGCTAACAGTTAAGCTACTTTTAGCTTAAGTTGACACCTTCAAAATTCCAAAATTACCGGCGTATGGTCGCTGGGTTGGGTTAATTTTCTAGGCGCAACATCGATAATGCAACTTGTAGCACGCTCATACAGAATAGGTGTGAGATAGTGATGGTCAATCCGCCAACCTAAGTTGCGACGGAAGGCGGCGGCGCGATAATCCCACCAGCTATAATTTCCGCCTTCTGTGGTGAACTTGCGAAAAGCGTCAGCAAACCCCAATTTCAGGATATCCCGTAAGGCTTGGCGCTCTGCTTCTGTTGCCATAATGTGATTTTCTGTACTCACTTGTTCGTGAATATCCTTATCTTCTAAGGCGATGTTGAAGTCACCGCACACACAAATTGCAGGTTCTGACAGCACCAACAATCGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 3376305-3378207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIVFZ010000001.1 Nostoc sphaeroides CHAB 2801 tig00000000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3376305 37 100.0 38 ..................................... TCCTGATCCATTGATTATAAATCCTAATTGAAGGTACC 3376380 37 100.0 34 ..................................... TCAAGCCAGATTCAATCCAATTCTCCCAAGGGAA 3376451 37 100.0 35 ..................................... AAGAAGACTGGCACAAAGACCGTACAAAGTAGAAT 3376523 37 100.0 34 ..................................... TGATGAGCTTGCCAGTTTTCAATACAACACTGCG 3376594 37 100.0 35 ..................................... GGCACAGTTTGTATTCAGAAATGGCAGATGGGTGT 3376666 37 100.0 33 ..................................... TAAACTTGAACGACTGAGAATTCACCCCGACAA 3376736 37 100.0 35 ..................................... GCATCATTTTGCGCTTTGAGGAGGGTAAGCCAAAA 3376808 37 100.0 35 ..................................... CTTGACAATGCCATTTTCTAGAATTTGGAGGTTGC 3376880 37 100.0 34 ..................................... CATAATCTGCATACCACTTCACCAATAAATGAAA 3376951 37 100.0 35 ..................................... GCTGTGGAAAAATCCGTTGGAACTGCAATTACAAA 3377023 37 100.0 38 ..................................... CTTTTCACTGCTCGCTGCGCGAGCAGTGAAACCCAACC 3377098 37 100.0 32 ..................................... AACTAGAGCGCAGTAAGTAGAGTGCATATTAA 3377167 37 100.0 35 ..................................... AGGTGTAACTGGATTAGATGACTGAACAAACTAAA 3377239 37 100.0 32 ..................................... TCAGATGGATATACGTAGTCATTTGCAGATAG 3377308 37 100.0 35 ..................................... AAGTACAAAATAAATTTTGATGACACGACGATTGA 3377380 37 100.0 35 ..................................... TAGTTTCTCCCACCAATTCCCGAATAATCTTTTTA 3377452 37 100.0 37 ..................................... GCAACACTGGAATTAAACTATACTTGATTCAGGTTAC 3377526 37 100.0 33 ..................................... TTACCCCAGGATAACTGCCAATTTTTCAGAATA 3377596 37 100.0 37 ..................................... AGAGGGTTGATGGCTATTCACGTCAGACAAAAAGCGA 3377670 37 100.0 34 ..................................... CTTGCACCTTTTGAGAAGCAATTTGTAATCCAGC 3377741 37 100.0 34 ..................................... AAAGCTGTGATTAATGCTGGCAGCAAAGCAAAAT 3377812 37 100.0 33 ..................................... TCACTGGAATACAAACAAATCACAGCCTAGAGA 3377882 37 100.0 37 ..................................... CTTGCACCTTGATGTATTTGAGAGATTTGCTGGACAT 3377956 37 100.0 35 ..................................... CTTGACTCCAGCGATAAACGGCGATCGCACTACTA 3378028 37 100.0 33 ..................................... AGCAGCTTACGGGTTGAGGCCGCATGAAATATT 3378098 37 100.0 36 ..................................... CAATGAGTTTTACAAGGGCTGTTGCCATACTCCCTT 3378171 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Left flank : AGCTTTATCAGTTTATATCGTCTTGCTTGAAACAAGTTGACCGCCAAGATCGTTTTATGTTTTCTCTGCTGTTCATAGAATTAACAGACCTCATCCGCAATTCTTCCCTAGAAAGGGGAACGAAAGAGGTTTTGATTAAAACAGCTTTTAGGGAGTTTGCTTGTGCCATAACAGACTTTGAAGACGTTGCCAAGTAAGGTTGATCAGCCAACCTAATCAAGTAGGATATTTATAAGTAAGCAGCTTTTCCATTAGATTAGTTTTTTCGCTGTATGCGCGGATGGGTAGGTGTTCAAGAAGGAGTGACCACAAAAATGGCTGAATTGCCCTATATGCAAGAACTTGAGAGCGTTAGCATTTCTAAACCATCCGCGCACCTTATGGGGACTAGTTTTCAGCCATTTGCCTCTAGCCAATTCACAACTCCTCGTGTTATGATTTTTGCATTCGCGCAACCGAACCTTGAAAACCAAATAGAGCAACACTTTCACAAGCCAGCG # Right flank : CTCTTGGAGAAGCTACGCGATCGCATCCTATCAACCAATACAGTTCAGTTAAGGATAATCGTAGGTTGGGTTGAACTTTAGTGTTACCCAACAAATTCTCATAAATGTTGGGTTTCGTTCCTCAACCCAACCTACGCAGTTTAAGGTTTTTGGCTCTAACCCAAGCGTATTGTCCTATCAACAAAGTAAAATCCCCACACTTGAGGCAGGGACTATAGGCTGACTCTAAGCAGCTATTAATAGTAATTCATAATTTAAATAGCGTTTAAGATTTATGAATTAAGAATTAATAATTATTTAGTCAACTAAGATACTTTCGGTTGCTGCCATAGGATGAGTTTCAATTCAGAGCAATAGCAACCCCCACCGGTAATTTCTCCTTCGTGGTCAGCTAGCCAATCATAAATTTGTGTAGCTTTAGCTAAAGCCACTTTTTCTGATCGATAAAGTCGAGGAGTAGGGCAGTAGGCTTGGCCATTGATGTGTATAGCTGCAATCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTACCTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //