Array 1 143382-142497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVG010000008.1 Listeria booriae strain FSL L7-0978 NODE_8_length_177504_cov_70.339317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 143381 30 100.0 36 .............................. TTTAAAATAACTTTTGTAGACATAATTTGTAGCTCA 143315 30 100.0 37 .............................. AAGGAGGTGTTTCATAAGGATAATAGTATGTGTGAAA 143248 30 100.0 36 .............................. ATTAATAGCGCATTATTGGCGTCTAATTGTTTGATC 143182 30 100.0 37 .............................. TTGCTTCGGACGTTGATTTTGAACCGTCTTGCATTCT 143115 30 100.0 34 .............................. TTGCTAGATAGCGAACGATTAATCACATTACGAA 143051 30 100.0 35 .............................. ATTACTGAAATCGTCAACCCCAACAAAACACCCTT 142986 30 100.0 36 .............................. TCCTTTAAAGCCATGCGCGAATTTGCTCTTGAAGAC 142920 30 100.0 36 .............................. TCCACTCAAACATTTACTTATTTCCTTCCTTGTGCT 142854 30 100.0 36 .............................. ATTCTAACTAGCTCTTTTAATTTTTGTACAGGCATC 142788 30 100.0 36 .............................. AAGTTTTGGCGATTCCCCCGAGATTCCGTATACGCC 142722 30 100.0 35 .............................. TTATGATGCTCGGGCACGCAGGTTACTGGATTGAT 142657 30 96.7 36 .............C................ TTTTCAAAAGTTGCTTGAGTGCCTAGCTTCGGATTA 142591 30 93.3 35 ........T........T............ CAAACAGATGTGGCATGGGCGGAGTTTGAAAGATG A [142573] 142525 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 98.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAAGGGGATGGCTGATAAGTGGCGTTTGGAAAGCGAGGACCAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGGAAATTTAGGATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TAGATGGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCTAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAACTTGATGGCAGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 157534-156324 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVG010000006.1 Listeria booriae strain FSL L7-0978 NODE_6_length_190692_cov_68.123175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 157533 30 100.0 34 .............................. CTTTCCGCAATCCATACAACTACGCCCCATATCG 157469 30 100.0 36 .............................. TCTTTTGCTGTCGCTTCTTCATCCTTTCCGCTAGAC 157403 30 100.0 36 .............................. CGAAATAAGACGCCATGCGGCAACACAATCGCCATT 157337 30 100.0 36 .............................. TGAAACAGGGGCGCTTGGTGGGAAACTGATACCAGC 157271 30 100.0 36 .............................. TTCATACAGGGCTGAATGTTCGTGCAACAGCTCCAA 157205 30 100.0 34 .............................. AACAAGACATGTTGCAAATAACGGAAGGTAGTGC 157141 30 100.0 36 .............................. TCATAAACACTGCAGTGTATTCCTCAAATGTGCGTC 157075 30 100.0 36 .............................. TCATCAGCATTACAGTTAGCAGTAGCAACAGGATTA 157009 30 100.0 34 .............................. TGAATTGGCAGAATTTGACTTAATAGAACTTCCA 156945 30 100.0 34 .............................. GTGAAAATATGTAAGGAATGTTTTATGACTGTTA 156881 30 100.0 35 .............................. ATGCTAAAAGTGAGCCTTTGGAAGTCACGGTAAAA 156816 30 100.0 36 .............................. ATACAATTCAGGAATATATCGTACATCATCCCGAAG 156750 30 100.0 37 .............................. AGCGCAAGCATGATGCGCGATGGAGAATGTATTTTCA 156683 30 96.7 36 .............T................ AGAGTAAAAGTCCCAATGCACAGCAGAGGAGATTAC 156617 30 96.7 36 .............T................ AAGACTTTCAATTTACAGGACACAGTTTAGGCGGCG 156551 30 96.7 35 .............T................ ATGCCAACCACATCTGTCATATCGCTTATTTTCCA 156486 30 96.7 37 .............T................ GTTATAACCAGTCCTATTATCATCCATGCAGCACCTA 156419 30 90.0 36 .............T............G.G. AAGGACAAAGGCCAAACGGTACACTTTACAAACCAG 156353 30 76.7 0 .......A.C...T.C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 97.6 36 GTTTTTATCTAAGCAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAATATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGAATTGTAAGGTTTGAGAGCTGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTACTTTGGCAGACAATCTCTTAGCCAGTATACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTGCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATCTTCCTGGTGTGTCGTAT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 55860-57072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVG010000014.1 Listeria booriae strain FSL L7-0978 NODE_14_length_105458_cov_69.468196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 55860 30 100.0 35 .............................. GAAGCAGAAAAAACTACAATGAATTGTGTATCTAA 55925 30 100.0 35 .............................. GGAATTAAATCGATGGCCAATGGCGGTGCATATAG 55990 30 100.0 36 .............................. TGGTGTTAAGAATTACAATGTGGACATTGTGGCAAC 56056 30 100.0 35 .............................. GTCTTTGTGTCACTTTAGATAGTGCGATGACATAA 56121 30 100.0 36 .............................. GTTAATGTTCCAACCGCACCATTTAAGGTGAATTTA 56187 30 100.0 35 .............................. CGGTATCTTTATTCTCTAATAAAATATCGAAAGAC 56252 30 100.0 34 .............................. TTTTTAAGCGTCAAAGGGATTGTTGCTGTATTCA 56316 30 100.0 36 .............................. ATACTTCTAAGAAGTCATCCATATCTAGCGCACATG 56382 30 100.0 36 .............................. GTCACAGATGACCACCCAACCGAACTAGTAACAGCA 56448 30 100.0 36 .............................. GTTTCTAATAATGTCTTCTAGTTTTTGTTTGTCGTC 56514 30 100.0 37 .............................. TTGACCAGCGAGCTTATAACTGTCCATACGCCACTTA 56581 30 100.0 38 .............................. CCAAATATTAAAGTTCAAAGAACTGATTGAACGACTTC 56649 30 100.0 35 .............................. ACTGGTCTTTTGTATTCTGGCGTTCTTACTATTTC 56714 30 96.7 37 ..........................G... AAGATTGATAGCAGCTTTGTCTTCTTTTAACTCGTTG 56781 30 100.0 35 .............................. AAAAGCATTATCTATTTTTGTAGGTCAAAATTTCC 56846 30 96.7 34 T............................. GTTAGTTTCATGCTCTGCGTGTTATGCGTATTCA 56910 30 100.0 37 .............................. TTTTTTTGTATGCTCCAGTTTGGCTGTTCATTTTCAT 56977 30 100.0 36 .............................. GCAGGTTACCAAGGATCCTTTGAGAAAAAAGATATT 57043 30 80.0 0 .................A..C..CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.6 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATTGTGCTAATTGCCGTCGGATTCGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCTCGCGAAGTAGATTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGAGAGAATGGAGTAGGATGTTTTTCGAGAGGTTGAAAAAAATAAGCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACATATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAATACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 60320-61142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVG010000014.1 Listeria booriae strain FSL L7-0978 NODE_14_length_105458_cov_69.468196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 60320 30 100.0 36 .............................. TTTGTTTCCGACGATTCGCCGTAAAGGCCCGTTTTA 60386 30 100.0 36 .............................. GTTTAACGCTATGACAGCTTATACAGTAGACAATGA 60452 30 100.0 36 .............................. TTGTGCCTATAATAAAGGCTCAAACGATCCGGCACG 60518 30 100.0 37 .............................. TCGTCTTAAATGGCTGTCTGATAGTATCATAGTAACT 60585 30 100.0 35 .............................. AGCGAGAGTGGATAAGTTTTTCGCCAGTTAATTAA 60650 30 100.0 35 .............................. TAATCGAGTAAATCCTTCATGCCAGACACGCTAGT 60715 30 96.7 36 ........................A..... TTGTTCTAAAATAGGGTATCTCTCTTCTGCGTGCTG 60781 30 100.0 37 .............................. TTACGAATGTTGCCAGCCATTCTGGTCCAAGCTCTAG 60848 30 100.0 36 .............................. GAACTTAATTCTCCGTTTAACGGTCCTTTGTCTTCA 60914 30 100.0 35 .............................. AAGGCTAGAAAAATTTATGAAGATGCGACGAAAAG 60979 30 100.0 38 .............................. TCCGGACCACAAGGATTTGCAAGCGGAACACCATTTCA 61047 30 100.0 36 .............................. GATTACGATGCATCAAATCATGTTATTGCCAGTATT 61113 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAAAATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTTTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTGTTGGTACTAAAGGGGTTAAGCCTATTTTCGAGGTTTGGGTTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTCGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAAAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTAATACTGAAAAATGGATATTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCTATCTGTACCAAAATTATATGGTGTGATCGAAGTGATGGAACCAGATGTTGTCACTTCTTGTTTTTCAACAACGACTTTTTTCGTACCTAGTACATTGCCGGCTGCGTCATAAGCAATTA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //