Array 1 34099-32500 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYD01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UB85 NODE_7_length_166753_cov_92.301821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 34098 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 34037 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 33976 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 33915 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 33854 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 33792 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 33731 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 33670 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 33609 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 33548 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 33487 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 33426 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 33365 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 33304 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 33243 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 33181 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 33078 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 33017 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 32956 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 32895 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 32834 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 32773 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 32712 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 32651 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 32590 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 32529 29 96.6 0 A............................ | A [32502] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52151-50231 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYD01000007.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UB85 NODE_7_length_166753_cov_92.301821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52150 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 52089 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 52028 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 51967 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 51906 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 51845 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 51784 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 51723 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 51662 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 51601 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 51540 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 51479 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 51418 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 51357 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 51296 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 51235 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 51174 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 51113 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 51052 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 50991 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 50930 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 50869 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 50808 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 50747 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 50686 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 50624 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 50563 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 50502 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 50441 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 50380 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 50319 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 50258 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-227 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYD01000180.1 Salmonella enterica subsp. enterica serovar Typhimurium strain UB85 NODE_181_length_232_cov_1.406780, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 76 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 137 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 199 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TGCTCACGCCCTTAG # Right flank : TGCGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [10.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //