Array 1 117119-116295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJE01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain BCW_2034 NODE_1_length_604831_cov_6.17856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117118 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 117057 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 116996 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 116935 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 116874 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 116813 29 100.0 32 ............................. CAGTATTTCGGTATGGCTAGCCACAGCGCGAA 116752 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 116691 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 116630 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 116569 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 116508 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 116447 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 116385 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 116324 29 96.6 0 A............................ | A [116297] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 134869-133377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJE01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain BCW_2034 NODE_1_length_604831_cov_6.17856, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 134868 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 134807 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 134746 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 134685 29 100.0 32 ............................. ATGCTGGCGCATCATGTAAAATCGCGTGCCAA 134624 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 134563 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 134502 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 134441 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 134380 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 134319 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 134258 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 134197 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 134136 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 134075 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 134014 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 133953 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 133892 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 133831 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 133770 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 133709 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 133648 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 133587 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 133526 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 133465 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 133404 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //