Array 1 29102-27118 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPU01000048.1 Salmonella enterica subsp. enterica serovar Singapore strain 1234 NODE_2_length_475255_cov_73.7975_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29101 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 29040 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 28979 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 28918 29 100.0 32 ............................. AAATTGCTCGAAACCGTCGCCTATTGGGAAAT 28857 29 100.0 32 ............................. CAAAACGGAGACGCTCCATAAGGGCGCTAACA 28796 29 100.0 32 ............................. AAAAATATTTACAGATTGATAAAAATCTCTCT 28735 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 28674 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 28613 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 28552 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 28491 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 28430 29 96.6 32 ............T................ GACGCTTCACCTGCATCAAATTCTCCTCCAGT 28369 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 28308 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 28246 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 28185 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 28124 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 28063 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 28002 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 27941 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 27880 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 27819 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 27758 29 96.6 32 ............T................ TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 27697 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 27636 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 27574 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 27513 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 27452 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27391 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 27330 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 27269 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 27208 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 27147 29 93.1 0 A..............A............. | A [27120] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46754-45384 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQPU01000048.1 Salmonella enterica subsp. enterica serovar Singapore strain 1234 NODE_2_length_475255_cov_73.7975_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46753 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTAACCGG 46692 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 46631 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 46570 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 46509 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 46448 29 100.0 32 ............................. ACGTTATGGTTATCCATGAGGTTGCACGCGAG 46387 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 46326 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 46265 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 46204 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 46143 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 46082 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 46021 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 45960 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 45899 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 45838 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 45777 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 45716 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 45655 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 45594 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 45532 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 45472 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 45411 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //