Array 1 30021-28974 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXQH01000015.1 Riemerella anatipestifer strain RCAD0427 Scaffold15, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
     30020	    47	 100.0	    29	...............................................	CTATTTTGTTTTTTAAGTGTGAATTGTGC 	
     29944	    47	 100.0	    30	...............................................	TTCTACAAAGTCTAGCCACGCACCCATAGC	
     29867	    47	 100.0	    30	...............................................	ATATCACGAAAATTTAAAGTTTAGCGACAC	
     29790	    47	 100.0	    30	...............................................	AGCCTCTAACTCATACGCACAGGCACAGGC	
     29713	    47	 100.0	    30	...............................................	CGACAACTTTTTTTGGGTGGCGCCGCCAGA	
     29636	    47	 100.0	    30	...............................................	TTTCGTACATAAATTACGCCTCGTGCGTGT	
     29559	    47	 100.0	    30	...............................................	TCTTTATACTAAGAGCATTTAGCAACAATA	
     29482	    47	 100.0	    30	...............................................	TATTTTCCAAACAGGCGATTTGGCGGGTTA	
     29405	    47	 100.0	    30	...............................................	TTTATCGCTAAAATTATTAAGGGCAGGAAA	
     29328	    47	 100.0	    30	...............................................	CCACCAGTAGGGTGGATGAAGAAACTGAGG	
     29251	    47	 100.0	    30	...............................................	TAAGCGGTAAGACTGCAAAAGAATTAGCTG	
     29174	    47	 100.0	    30	...............................................	AGATGAAGTTGCAGAGGCATTTTTCTCAAT	
     29097	    47	 100.0	    30	...............................................	GCCAATCTTTGGTAAAAATACACCTATTCC	
     29020	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        14	    47	 100.0	    30	GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC	                              	       

# Left flank :   ATCTTTGTGGTAGTTTGTAGCTTAAATTTATTTTTTATGAAGTTAGATTTTGAGTTCAAAATCAGTTTATGAAAATGAAAAAGGTTTTAAGTTTGTTGCGAAACTTAAAGCCGAGATGAAACAGAAAATTCCCAGTCTGTTATATCCTGAAACAAAGGAGGCTTTGTCCCCCTTACTTCTAAAGGCAAATTTAGAAATATTTTTTCAAATGAAAGAATTTATAAAATTGATTAAAAATATTTTCTCGAAAGAACCATTTGAGCAAGATATAACTATTAGATTTAGTTTATCTTTAGAGCAGATAATATTTATTTTTTAGCTTTAGCAGGAATGATATACATCTTCTTAAAATAATATTATGAAAATAGAAGATATACATACCTCGTGGATACAGGAACAGATAAAAGAGCTAGGTATTAAACGAAAAGACCTAACAAAAGACCTGTTACTAGATAGAAGTTATTTAAGCCATCTGTTTTCTAGTGATGACAAACCGCATA
# Right flank :  CTCAAAAAATAAACCCGTTGTTTTTCAATGGGTTTTGCTTTTTATTAGGATTAGATTTTTCACTATTTCTTGTCTATTTCTACTTTAGTAAATCCTTTTTTCTGTTTCTAAAAAAGTTCTAATTGCTGATAGGTTGGTTTGGGTTCTTCTTTAGCTCTCGCAAAGAAAATTTCTATATCTCCAAACTGTTTATCTGTAATACTCATGATAGCCACCTTACCGTGCTTGGGAAGTATTGATTTTACTCTTTTGATGTGTACTTCTGCATTTTCACGACTTGGGCAATGCCGTATATAAATGGAAAATTGGAAAAGACTAAACCCATCGTCTTCAAGCCGTTTTCGGAATAGCTGAGCCGCTTTACGCATCGCTTTGGTTTCTGTTGGTAAATCATATAACACCATAACCCACATAACTCGATAAGCATTAAAACGATTAAACTTCATAAAACTCAGGCACAGATAGTTGTCTTTTTTCTCCGGTATAACATTTATAAACAG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-6.30,-6.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [4.5,4.87   Confidence: LOW] 

# Array family : II-C [Matched known repeat from this family],   
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