Array 1 1578363-1574497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071305.1 Streptococcus suis strain SC183 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1578362 36 100.0 30 .................................... TTTCCATGGGGCAGTATAGGTCCTGACCGT 1578296 36 100.0 31 .................................... TAGGGGAATTAAGTCATACCCTGCTTGTGGG 1578229 36 100.0 30 .................................... TGCACCAGGCGTTGGCGGGTAATTAACATT 1578163 36 100.0 30 .................................... AGTGGCTAAGATGGGGGAAATAGGTCCTAC 1578097 36 100.0 30 .................................... TCTATTTTCCAGACATCGACTGGTGGTTCT 1578031 36 100.0 30 .................................... TAACACATTTATCGTATTGCGAAACAAAAA 1577965 36 100.0 30 .................................... TTTGACTTTGATAATTTATTTATTACAAAA 1577899 36 100.0 30 .................................... TTAGAGTAATATCAGCTCGCTATATGTTCA 1577833 36 100.0 30 .................................... TCCGCTTCCAATATTGGCGGTGACTATAAT 1577767 36 100.0 30 .................................... TGATAGTGACAGAAACCAATTCCACACCAT 1577701 36 100.0 30 .................................... TTGTAACAAGTTTGGTATTTGATATACGTT 1577635 36 100.0 30 .................................... TATCTATCTGCTAGCTTATTGAGGACTTCC 1577569 36 100.0 30 .................................... TATGTCTCCGTCTCCTGAGCCTGTTCCTGT 1577503 36 100.0 30 .................................... GAACCAACGGCTGAAAACTTGGTCGGTTCA 1577437 36 100.0 30 .................................... ACCGAGATATTTTTGGTAGTATCAGCGAAA 1577371 36 100.0 30 .................................... CAAGAGCATCCTCATCTACCGCAATCATTC 1577305 36 100.0 30 .................................... TACTATCGCAGACGCTACAAACTATGCTAT 1577239 36 100.0 30 .................................... GTATTTTTAAATTGTATTGTAGAATTTAAT 1577173 36 100.0 30 .................................... TAGGTCTGAAATTGATTACACTATTGTCGC 1577107 36 100.0 30 .................................... CTCGCGAACAATCATCGGGAGCAATCGGAA 1577041 36 100.0 30 .................................... GTAGAAAGTATTATCTTAAAAACGAGGTAG 1576975 36 100.0 30 .................................... ATTATTTGTCATTAATGCAAAAATCTGATG 1576909 36 100.0 31 .................................... CTCAAATGATTGCTTATATTCAATCTCTATT 1576842 36 100.0 30 .................................... ATGAAGCTCCTGAAGTTGAAGAAGAGGCAG 1576776 36 100.0 30 .................................... CATGAGAGTCGAAGAGATTGCCCAGCGTTA 1576710 36 100.0 30 .................................... TTTTCAAACAATGACAAAGAAGTCATGTAG 1576644 36 100.0 30 .................................... CAATCCTAAAACGTTTGAAGCCGAATTTGT 1576578 36 100.0 30 .................................... TAAAAAATCAAGTGGTAAATGCTGTCTGAT 1576512 36 100.0 30 .................................... AGCTTATAGAGACAGTGACGGGTCTATATC 1576446 36 100.0 30 .................................... TCAGTTCAGACCTTCAGAAAGGTAGACGCA 1576380 36 100.0 30 .................................... AAAACAAGCAGTAGATGATGGATATATTAA 1576314 36 100.0 31 .................................... ACGGACACGTCGTGATTGTCGAGGCCGTCAA 1576247 36 100.0 29 .................................... GTAGATGATTTTGAAGCGTTTACGGGTGC 1576182 36 100.0 30 .................................... TCTAAATTCAAGTGGTATGGTTAAAGAGAG 1576116 36 100.0 30 .................................... CGTTTCTTCTCTTATGTTATTATCATTTCT 1576050 36 100.0 30 .................................... ATTATCAGTCAAACAATGAAATTCATTTTG 1575984 36 100.0 30 .................................... AACCGCAGACATTGAGAAGGTTGTGGTTGA 1575918 36 100.0 30 .................................... ATTATTTTGAAATAATTTTCGGATATACCT 1575852 36 100.0 30 .................................... AGGTTGGAATAGAAACAGAATGGTTGGTTG 1575786 36 100.0 30 .................................... AGATAATGGGAAGATAGAGGAATTGTATAG 1575720 36 100.0 30 .................................... GGTTAAGGAATCGCCCCTCTATAATCATTT 1575654 36 100.0 30 .................................... CTTTAACAAGTTAGGAATTTTATAGACATT 1575588 36 100.0 30 .................................... TATCAATGAACTCGTCAAAGGCAATATCAC 1575522 36 100.0 30 .................................... TCTTTTCTCTTCTGTTGAAATATCCCCGTC 1575456 36 100.0 30 .................................... TGAGCAAAATCTAGTTGGCAATCTATCAGT 1575390 36 100.0 30 .................................... GATATACTTCCATTGATTCTGCCCATCAAA 1575324 36 100.0 30 .................................... CGGCCCAGAAAGATGGTTTTATGGTTTCGA 1575258 36 100.0 30 .................................... TTACAAAGACTTCTTGAAAGCCTGGGAACG 1575192 36 100.0 30 .................................... AGTAATGGATCCATTCTTAAGAACCCATAT 1575126 36 100.0 30 .................................... TATGAATTCGGCGCCATTTCTCATAACACT 1575060 36 100.0 30 .................................... CGTTATAAATTGTTAGTGATGGAGCATTAT 1574994 36 100.0 30 .................................... TTTGGATACTCAGGAAAAGTTCATCCCAGT 1574928 36 100.0 30 .................................... ATCTGCTGATTTTTGTCTTTCTCGTATTCT 1574862 36 100.0 30 .................................... ATACATTAAGACACAGATACCTAATCGATA 1574796 36 100.0 30 .................................... ATTGTTGTTGTCCTATCAGCGGGTTCAGTT 1574730 36 100.0 30 .................................... ACGCTATTTTTTTGAAATTAGCTGATTGCC 1574664 36 100.0 30 .................................... TATTGTGTTGAAGCGATATTTCCGAATGGA 1574598 36 100.0 30 .................................... TACCAGACTTTCTATAAGAACTAAACAACT 1574532 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 59 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATCGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCATATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGATAAAAAATAGTCTACGAG # Right flank : GTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTAGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCTACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //