Array 1 263088-259750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUD010000002.1 Tyzzerella nexilis strain MSK.23.22 NODE_2_length_420522_cov_292.513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 263087 32 100.0 33 ................................ GACAAGTTGTACAAACGTCGGAGACGGCATCTA 263022 32 100.0 34 ................................ TCCATTGTAAAAGCTATAAAACTGTTCATGAAAG 262956 32 100.0 35 ................................ ATAATCTCTTGTAAATCACTTTGTGATATGTTTTC 262889 32 100.0 33 ................................ TTTAGGCTTATTAAACTGCTGTAATTTGTCGAT 262824 32 100.0 33 ................................ TCAAAAGAATAAGCGTAGAGACGCTAGGAAATT 262759 32 100.0 33 ................................ CACTTTTAACGTACAACACACACATACTACTAC 262694 32 100.0 33 ................................ TCCATATCTGCATTTGTTGTAGATTAACATTTG 262629 32 100.0 35 ................................ CTGGTCTCGACAGAATGTAATCTTATGCAAGTTAC 262562 32 100.0 34 ................................ CAACTATGCGGTATTGGTTAATAATCCGCACTTA 262496 32 100.0 34 ................................ AAGCGAGATGTACGCAAGGAATACGGGGTAAAAC 262430 32 100.0 34 ................................ TTTTAAAAACCTCATGTGAAATCTACGATTAAAT 262364 32 100.0 34 ................................ AATCTGACACCACTCATTTGACTTTTCGATTGTC 262298 32 100.0 33 ................................ TTGGTAAAGCGTAATATCCCATCCGAAATCTCC 262233 32 100.0 34 ................................ ATCATGCAATCACTTCTTGTTTCTGAAGAACCGT 262167 32 100.0 35 ................................ GATTAGATGATGTTATTCTATTTGTAGAAAGAAGG 262100 32 100.0 36 ................................ TAAAGTCGGTCTTGGTAGCATTTGGAGTAGTACAAA 262032 32 100.0 34 ................................ AATTCGATAATTTCACCGTAAAGCTGCATAAATC 261966 32 100.0 37 ................................ TTGTGACGTACACCAAGCAAATGCTTGCAGAATCAGG 261897 32 100.0 33 ................................ TTGCGCACCTGATGTGCTAGTATCTCATTTTCC 261832 32 100.0 35 ................................ ACCTCTCTAATATCTATGTGTTGCTGTTTGTACTT 261765 32 100.0 35 ................................ ATCTGCGTGTTTATTATATTTGTAAGGGCAGGGAC 261698 32 100.0 34 ................................ TAACGTAAACGCCTTATTTTGCGAGCTTTGTACT 261632 32 100.0 32 ................................ TTTACAGCAATTCGATTCTCGTACATCATCAG 261568 32 100.0 33 ................................ TCCTATCTCGGAGATGGCTCCTATGGCATTTTC 261503 32 100.0 33 ................................ GAAAAATAATAAACATCAAGATTATTTTTAGAC 261438 32 100.0 34 ................................ TCGACAGTGGGCTACCCGTCTTATGTTAGAGGAG 261372 32 100.0 34 ................................ GTGATTGTGATGTGACATAAAACTACAAATAATA 261306 32 100.0 36 ................................ TGCTTTTTCTTCCCACGCTTTTAACCTCTTGTCTGT 261238 32 100.0 35 ................................ TTTTAACAGTCTCGGTACATCCTTAAACTCCTTTT 261171 32 100.0 35 ................................ ATTATAGCGGTCAAGAGCAAGGCTTGCTTTCGCTT 261104 32 100.0 33 ................................ AATCTGCTGTCACTCTTAATGTCCGGTCTGTAC 261039 32 100.0 33 ................................ TAGTGGTCTGAATGCAGCAAAGTCGGTTGTGTC 260974 32 96.9 35 ....T........................... GCTCAATTCAAACAATGATCCTACAAGCTCACCCA 260907 32 100.0 34 ................................ CTCTGTATCAAATTCTAAAACAATATAATTATTT 260841 32 100.0 33 ................................ ATTGAAAGAATAGCTCCTGGGGTATTCAGGAGA 260776 32 100.0 34 ................................ TTATTCGGTTTTGTTACAAATCCGTCTAAAATAA 260710 32 100.0 37 ................................ AATTATTTTAAATTTCGGTGTTGACAATTCAATTTAA 260641 32 100.0 35 ................................ AAGGTTGGTTGTATTGGTACAAAGAACAGACAGGA 260574 32 100.0 35 ................................ TACTTAAAAAGGCGAGGTGTTTTACCCCGCCTAAA 260507 32 100.0 34 ................................ TTCCATGTTGCATCATAAATAGGGCAGTCACTGT 260441 32 100.0 33 ................................ TTCCGATGACCCTACTAAAGGTGGTAAATTACT 260376 32 100.0 34 ................................ GATTAAACCAGCTTTTAGGAGATCGTCTCGCACC 260310 32 100.0 33 ................................ TTTTTCCACGAAACCGCCAAGCTCACCCGCTTT 260245 32 100.0 33 ................................ ACAGAATTAACTTGCTGTGTTATATCGATTGTG 260180 32 100.0 34 ................................ AACATTTAGCCGTTTTATTTCCACAATATATAGC 260114 32 100.0 35 ................................ TTTGTATCTACGCTTGTTTTAAAAACACTGTTCTT 260047 32 100.0 36 ................................ TTAGATATGTAGAAGAGGACAAAGCAGAGGAGCTTA 259979 32 100.0 34 ................................ GTTATCGCAGATGGATCCATCCGATCGGGAAAGA 259913 32 100.0 34 ................................ TCCAGCTAAAAAACCGAGCATTGTGAGTATTATC 259847 32 100.0 34 ................................ GAGCTTGGTATTTTGGAGACAGACGGAAAACTGG 259781 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 99.9 34 GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Left flank : CAGGAGAAAGATGAAACAGATGCAGGCATATCTTCAGGAAGTTTTAAAGAGACAATATAGTACAGAAGGATTTAAGGATATACTTAGAAAAATAAATACAGGATTATCTTGTGTGTTAAAGTGTGATAATGTGATTTTACTAGGTGGTTATAAAGGATTACTTCATTCGATATTATTGGATGCGAAGCAAGAAGAGTATTCTAACGGAATATACATAGACAATGAGAAAAATTTGCCACATGGGATTGTTTGCCTGACATATAAGAGATAATACGGAGGGTTCTGTAAGAATAGAAAAATGTAGTGAAAATATACACAGAAAATGTTGAGTGCGAATACCTGGTAAACAGAAATTTCCTGGGGGATTCGCACCGAAAAACATGTCGTATTTGGGTTGAATATGAAATTGATTGTGTGATAGTCTTGTAATGTTGGGAAAAAATTAGTATAATTAACAAAAGATTGACTGATTATAAAAGAAAAAATTAGTCAATGTTGCA # Right flank : CACGAGAAACTTTGTGGGAATGAGTGGGGAGTGTGGTAACACAAACAATTAAATATTGAATTTGAGGGGGACTTGGAAAAAAGTATCCCTTTTCAACGTAAGGCGTTCAGAAATGAGCGTCTATTTTTTACCCAAAATGAAATGAGCATTAAATTTATGAAAAAAATATTGAAACGATTGTGTACGGGGGGCTTTGCCTTTTGCGGCTGTATTTACTGATTTGTCGGCTATACCCGTTTTTGTGGAACACAAGTAATACTGTACTGGACGAAGTCAGAAGAGCGTGTCGGTATCGTTGAAAAAGTGATGAATGACGGTTCAATTGGTTCTACCTTTAATGAGGGATACATAAGCCGAGGGTGAAACTGCCTGTTGTATTGACATGAATACCGCCTTTCAGAACGGCTGCAAGACCAAAGCCGACGCAAGCGCACGTAAGAGTGGCGCAAAGCAGCCGGCTAAAAATGTCAAGGTACTCGTTATTTTGCGTTCAAGAATAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 272636-271597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUD010000002.1 Tyzzerella nexilis strain MSK.23.22 NODE_2_length_420522_cov_292.513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 272635 33 100.0 35 ................................. CTGTATCCGTTGCAACATTTGTATGATAAACTCTT 272567 33 100.0 34 ................................. AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 272500 33 100.0 33 ................................. ATATTTGATCTCCTTGTAAATTATCCTTGCTCC 272434 33 100.0 36 ................................. GAGATGAATGGACACAAAATAGGACAGTGGCTTGTA 272365 33 100.0 34 ................................. TTGATTGTGGGCGCTCATTCGCCAACTCTACTTG 272298 33 100.0 34 ................................. TTGGAATCGCGTTGTAAAAGCTCTATCTAGCAAC 272231 33 100.0 34 ................................. GTAGTACTTAGGTATAAAACCCTGTGCTTAAATA 272164 33 100.0 33 ................................. ACGCTTCGTCTCGTCCGCTCTCCCCAGACGGTC 272098 33 100.0 33 ................................. TTCCCAATAAGAATGAATGGCATCTTCATGCTC 272032 33 100.0 33 ................................. TTGATAATCCGGATTTGTTGGAGGTGGAGTGAT 271966 33 100.0 34 ................................. TTCTATCAGTTACAATATACGTCTCAGAAATATT 271899 33 100.0 33 ................................. TGACAGTCTTTCCACTAAGCACATCGTCAAAAT 271833 33 100.0 36 ................................. AAACACAATATCATCACAAATCCTGTCTATAGTAAT 271764 33 100.0 35 ................................. CTTTGTAGTCAGAGCTCCTGATGCCGCCAAAACCT 271696 33 97.0 34 ...........G..................... GTAGGTGTCGCTCCACTTGTAAACCAAAACGGAT 271629 32 84.8 0 ...................T-.A..T..T.... | G [271604] ========== ====== ====== ====== ================================= ==================================== ================== 16 33 98.9 34 GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Left flank : CAAGAGATCTGAAGTATCTGTGTGAGAATGGGTATGAGCTGAAGAGAGTCAGGGCGGTGGATATGTTTGCGAATACGGTACACGTCGAGACTTGTGTGTTGCTACAACGAAGAGCTATGTAGAAATCCTTAATTTTAGGCACTTTGCGAAGCATTTCGTGTTTTCACCAGAGGGGAAAAATAGTCGCGATAAACACCTCAAAAACTATTTTGATGTTTCGGTGGTTGTTGATATAGGGTGTGGGAACACAACAAATTAAATACTAATTTCAGGGATACTTGTTAAATATCCTACAGAATTTAATTGTCGAAAATATAGAGAGAATATTAAGTGCGAATGTCTAGTAAACATAGATTTTCTATGGGATTCGCACCAAAAAATAGTTCATATTTAGGTTGAATATGAAATTGATAGTGTGATAGACTTGTAATTATAGAGAAAAATTAGTAGAATTAGCAGAAAGTTGAACGATTGTAACAGAAAAATTAGTCAACATTGCT # Right flank : ATTTGAAGATATATAGAGACAGTCTGTCAGACGAAACGGAGATCAAAGACGTAGAAGAATTGTTAAAGTATTATATCAATAATAGAGAAGGTCTGATAGCGTATCAGTCACAAGGATTAAACTTACCGGAACATCCGGATGGATTGGAATACAGAAACATGGGAACTATGGAAAACCACATCTGGAGCGTGATTGCAAAACGAATGAAGCACAGTCATACCTGCTGGAGTAAACGGGAAAATCATCTGGCAAAGATTCTTGCAAAGAAATGCGGTGGAAAGTTATACGAAGTAACAGAAAAGTCAAAGCATGCCATATTCAAGGAAGAGACCGTGGAAGAAATTCTGATGGCAGAGGAAGTGGCTAAAAAAGTAGGAAAAGGATACGAATACCCTACCATAGGTCACATGGTAGGATTAGAGGGTAAAATAATAGGTGAACGCAAGAAACTGTTTGCAATGTCAGGATTTTAGTAAACAACTGTCAGAGAGAATGATAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 387789-386823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIUD010000002.1 Tyzzerella nexilis strain MSK.23.22 NODE_2_length_420522_cov_292.513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 387788 32 100.0 34 ................................ TACCCTCTACAAGAAAGATATGCAATTATTTATT 387722 32 100.0 35 ................................ TCACATGGACGAAGCAGAAAATGATAGTTGGATTC 387655 32 100.0 37 ................................ TAATAACAATACGAATATCGACTACGTGCCATATAAA 387586 32 100.0 34 ................................ AAAGCGAATCCTTCGTTGATGTCTGCTCTTGTTG 387520 32 100.0 35 ................................ TAAAAAAAGTGCCCAAGGTTTGCAGACCTTTTTCG 387453 32 100.0 35 ................................ TGCTCGTTTTCGATTTTTGCATCAAATTCCATCCA 387386 32 100.0 34 ................................ TTCTGAAACATGAAACTCACCTTTTTGTGATTTG 387320 32 100.0 34 ................................ GGGTTTAAAGAGAGTCAGGTCGATGTAGATGCAT 387254 32 100.0 36 ................................ TCATCATCTAGTCTTCTGTCCCAGTCCTCTGCAATC 387186 32 100.0 34 ................................ CGACCTTTATGAATCTGATTACAAATAAGTGTCC 387120 32 100.0 33 ................................ TCAAGTGCACAACTTTTTGGACTGGAAATTAAA 387055 32 100.0 37 ................................ CATATACAAATGCTCCTGCCACAAGTGCTGTGCCTGC 386986 32 100.0 35 ................................ CGGCATGGATTACTGTGGAGATGGTACAAGCTGCC 386919 32 100.0 33 ................................ GTACACCTCGCTCTACTTTTAATGTCCAGCATA 386854 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CCGGTGTTTCTTTGGAAATGAGGCGAAAATGGAATGTTAGTGTTGATTACATATGATGTGAATACAGAAACAGTGGCAGGAAAAAGAAGATTGCGCCAGGTAGCAAAGCAGTGTGTAAATTATGGAAGAAGAGTACAAAATTCTGTATTTGAGTGTATTTTAGATAATGCGCAATGTGTTATGCTCAAGGCAAAGCTGACAGATATCATTGATGAAGAGATTGATAGTCTGAGATTTTATTACCTGGGAAACCAATATAAAACGAAAGTAGAACATGTTGGCGTAGACAGAGGTGTTGCTGCTGATGGAATTCTTATCATGTAACAGGAGTGCGAATGGCAAGTATACATAAAAATGCAGGGGGATTCGCACCAGAAAAATGTACAAAAAGTAGCTAAGAAAGTGAGAATTAGGAACAAATGATAAGAAAAAAAGAATGATATTGATAAAATTTGGGAATATTTAACGTAATACAAGGCCTAAAATTGGGGAAAATTGCT # Right flank : TGCGTGTTGTGCTGCTTTCTGTTCTGCGGATTCAGGTCGGAGATATGTTGGATGAATGTGTGGAGCGCTTTCCATTTTAAATAATTGGTGATTTGAACGAAAAATATTGTAGCGGATGGAGTACGATTCAAATTGCACTAGCTATCTATCGATCAATCTGCTACAATCAGCTTATAGTGCGAGCTGAGAAATCAGCATAGCTGATTGTATATAGTAGAAAAATCCTGTCGGGTAAGGTCTAGCCAACCGCATGTACCGAGCCCTTGGAGGCAAAGCGGTAACGTTAGATTTCAGCGTAGGACAGGGAGCGACAGAGCCGAAGCGAAAATGAAGTGATCTGGGAAATGATTGTGAGGTCAGAAATGATAGATATGCTTATTAGTACAAGCAACGACAAGTTATTTTATAAAATTTTGTCCGTACAAAACAGTGTGGACAACAATATGGATTGTCAATGGAATTATACAAAGCATATTAAAAAGGGGTATTGAGCCGTTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //