Array 1 29609-27017 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAP01000014.1 Salmonella enterica subsp. enterica serovar Edinburgh strain 2012K-0034 NODE_14_length_138019_cov_3.02222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29608 29 96.6 32 ............................T ATGCCGGAACGCCGGAGTTGGTCGCGGTCACC 29547 29 100.0 32 ............................. AATCCGTCGCGGATTGGATTGCCAACCTCGAC 29486 29 100.0 32 ............................. CTGTTTTCCTGCGCGAATCCAGACCAGCGTAG 29425 29 100.0 32 ............................. GGCTGCCAAGCTGGGGAGAGCAGACATTAGGC 29364 29 100.0 32 ............................. TCAGCTCATGCTCGATGTTGTACCCAGCCTTC 29303 29 100.0 32 ............................. ATTTCTATCTTCACCCGCGCGCAATCGACGTC 29242 29 100.0 32 ............................. ATTGCCGAACAGCTTGCACTCACGCCGTACTA 29181 29 100.0 32 ............................. GACGCCGCAGAGCTTCACCGCTTACGCAATGA 29120 29 100.0 32 ............................. AGCATCACCGTCCTGGTGAGTAGTGCTTCCTG 29059 29 100.0 32 ............................. CACTGACGGCAACGGCAACGTGACTATTCAGA 28998 29 100.0 32 ............................. GCCTGCGCTGGTTAGCTCAGCAGGCCATGGCA 28937 29 100.0 32 ............................. TCTGTTACATTTGGCGCTTCAATTTCGCGAAT 28876 29 100.0 32 ............................. GAAACGCCATCCTGCGATTCAGGCTTGGCATG 28815 29 100.0 32 ............................. GACGGACAGGGCGTGTATGACGATGTCGTGAA 28754 29 100.0 32 ............................. GATGTCCTGCTCGGTTGGCGTGGTTGATGCGG 28693 29 100.0 32 ............................. GTTTCGCAGCCAGGCGGCGGCAAAGGGATCTA 28632 29 100.0 32 ............................. GGTATCCCCCGTCACATGCCGGGGTTATTACG 28571 29 100.0 32 ............................. CGGTGCTTTATGAGCGTCATGTGTTGCAGTAT 28510 29 100.0 32 ............................. TATGATGCCGAACTATTCCCCTACGGTCTGCC 28449 29 100.0 32 ............................. GTCTATTTTTTGAAATGACATGGCGTGTATGG 28388 29 100.0 32 ............................. CTTTCCAGACACGAATATCGTCTTCATATTCA 28327 29 100.0 32 ............................. CTGTCATACCCACTGGTATTAACCTGAACGCC 28266 29 100.0 32 ............................. TATACTTCCTATATTGGATGTAGGCAAGAACA 28205 29 100.0 32 ............................. GAACCGTGGGGAGTTAAAGACCTACAAAGTAA 28144 29 96.6 32 .........A................... CGATCTACATACACGATTATCTAAGTGGTGTA 28083 29 100.0 32 ............................. CCTCTGCGGGTATTGCTGGCGCAATGGCAATG 28022 29 100.0 32 ............................. GTTGTTCTTTGCATGTTCGGTAAATTAACAGG 27961 29 96.6 32 ............................A CAGTTAAACCCGGTTGTAACGTTCTGATATAC 27900 29 100.0 32 ............................. TACGCCGTAGGCGTTCTGTAAATAGGGTTTTC 27839 29 100.0 32 ............................. CGCCTCGCAAAACTGGCCTGCACACCCCAAAA 27778 29 100.0 32 ............................. ATCAGAGATTCTGAGGCCAGCATGACTGAATA 27717 29 100.0 32 ............................. GCTTAATATTAAATCTGCGTTACCTGAGACAA 27656 29 100.0 32 ............................. TCGCTGAGTTCTGATTCATCATCGTTAAAAAT 27595 29 96.6 32 ...........................T. AAGGCGGTGGATATTTACATTGTGGTACGCAC 27534 29 100.0 32 ............................. GGATTTATGAGATTTGAAGCCAAACAGCAGCA 27473 29 100.0 32 ............................. CCAATCAGGCTGAACATAACGCCGAAGCAGAG 27412 29 100.0 32 ............................. GAACGCAACGATATAGAGTTAGTTGTCGTTGG 27351 29 100.0 32 ............................. TCAGTAGCACCGATTTCCGGCGTTGCGGTAAC 27290 29 100.0 32 ............................. CCAGATTCAAGGCACGCAGAACACGCATGACG 27229 29 100.0 32 ............................. TCCCCTGTTTTCATATAGGCGTATATCTGTGA 27168 29 96.6 32 .............T............... ACGGCACCATCAGGCGAAAAGTGGTCTGAATG 27107 29 93.1 32 ................T...A........ ACGAACTGACAGTTGAACAGTGCCAGGTATTA 27046 29 93.1 0 ...........AT................ | A [27019] ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGACAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTATCGTTTTTACCTGTTTAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGATAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATACTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACAGAAAGTACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 51275-50149 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAP01000014.1 Salmonella enterica subsp. enterica serovar Edinburgh strain 2012K-0034 NODE_14_length_138019_cov_3.02222, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51274 29 100.0 32 ............................. CGTGCTGGAGTGGTCCGCAATGAGTACCAATA 51213 29 100.0 32 ............................. CGGCGGCATACGACCAGATCGAAGAGGCGTTA 51152 29 100.0 32 ............................. CTCACAAGCGCGTACAAGGGCGATTTAGACGA 51091 29 100.0 32 ............................. CGCAGAGATTGACCTGCTCGCCGGAACCGACA 51030 29 100.0 32 ............................. TCTGACGGCAGCAGCGGGGGGATTGGTGGCAA 50969 29 100.0 32 ............................. TTATCGCTGATAACCTGCTGTCCGGTGCCAAT 50908 29 96.6 32 ............................T GATGGTTTACGGGAGACGAGCATGACTGAACC 50847 29 100.0 32 ............................. CTAGTGGAGTTCCGCAGCAGGTATTGCCAGAC 50786 29 100.0 32 ............................. CGACATTGTTCAGGCAGTAGCATGGCTGCATG 50725 29 100.0 32 ............................. CACTGCTCCGTTATCCCTTTTGCCCGGCCCCG 50664 29 100.0 32 ............................. CTCCAATGCTGACGCAAGAAGCTTTATCTGGG 50603 29 100.0 32 ............................. CGCTGAAGAAGTGGGTTGGAGCGTCACGCATC 50542 29 96.6 32 ...........G................. CCAGGCCCAAACAGCATGAAACAGGGCGGTAC 50481 29 100.0 32 ............................. AACGAACTCGATGAGGATGAGCCGCCAGTAGT 50420 29 100.0 32 ............................. GCTGGGATCATGCCATTTACGACCGTTTTCTG 50359 29 100.0 32 ............................. GTGTGGTGAGTTCCTACGACCGGACCAGAAAC 50298 29 100.0 32 ............................. CCATGTGTTGCCATCCATCATCCAGCTGGCAA 50237 29 100.0 32 ............................. GTTGTAAAACTCGTTTTCATCCTTACCGGCGT 50176 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GTGTTCCCCGCACCAGCGGGGATAAACCG # Left flank : TGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGTTGCCGTCTGTGACTCATCCATTACCTCCCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTATATAAAAGCGCTGATAAATTTTTCCATAGAGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATTAACTTTTTTCATTAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTTATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTGGTTTATAAACAATGATATACGATTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGTTGCAACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTCGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCTCTGATGGCAGTTTTATGCAAAACACGTCGGCGAGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTCGCATGGTCATTACGATCATTGCGACGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGTGTGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAATTGTCGCGTGAGGTGAACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTACCTACCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //